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keuv-grvl / unirefxml2fasta.py
Last active October 26, 2021 03:01
Convert UniRef XML to fasta. Mostly to rebuild previous UniRef databases
#!/usr/bin/env python3
import argparse
import gzip
import logging
import sys
from time import time
from lxml import etree
import argparse
from mock import Mock
m = Mock()
parser = argparse.ArgumentParser()
subparsers = parser.add_subparsers()
query_group = subparsers.add_parser('query')
add_group = subparsers.add_parser('add')