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Test the docker image
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# verify that there are no existing images | |
nickl@W10-L-8TSRQ2:~$ docker images | |
REPOSITORY TAG IMAGE ID CREATED SIZE | |
# run Sanjay's image and start a bash shell | |
nickl@W10-L-8TSRQ2:~$ docker run -ti --entrypoint=/bin/bash sanjayboddu/ensembl-web-libs-03:experiemntal_release_94.1 | |
Unable to find image 'sanjayboddu/ensembl-web-libs-03:experiemntal_release_94.1' locally | |
experiemntal_release_94.1: Pulling from sanjayboddu/ensembl-web-libs-03 | |
aeb7866da422: Already exists | |
da4f789ee7b0: Already exists | |
c7c58f51749f: Already exists | |
42ed3ffa5e1c: Already exists | |
fa74475cc67d: Already exists | |
16a400d02648: Already exists | |
7745d3f07309: Already exists | |
bc2a61d53e3a: Already exists | |
Digest: sha256:dfd611e130bffa7539acf2d49d1ca7b9114857818bad664b615209c9135131e9 | |
Status: Downloaded newer image for sanjayboddu/ensembl-web-libs-03:experiemntal_release_94.1 | |
# checkout the ensembl code | |
[www@225b4e4738d8 linuxbrew-automation-2.0.0]$ git-ensembl --clone --checkout --branch release/94 public-web | |
* Processing 'public-web' | |
* Working with module 'ensembl' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl.git' | |
Cloning into 'ensembl'... | |
remote: Enumerating objects: 90, done. | |
remote: Counting objects: 100% (90/90), done. | |
remote: Compressing objects: 100% (62/62), done. | |
remote: Total 130811 (delta 63), reused 41 (delta 28), pack-reused 130721 | |
Receiving objects: 100% (130811/130811), 54.77 MiB | 19.78 MiB/s, done. | |
Resolving deltas: 100% (91357/91357), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-compara' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-compara.git' | |
Cloning into 'ensembl-compara'... | |
remote: Enumerating objects: 682, done. | |
remote: Counting objects: 100% (682/682), done. | |
remote: Compressing objects: 100% (334/334), done. | |
remote: Total 137697 (delta 351), reused 502 (delta 244), pack-reused 137015 | |
Receiving objects: 100% (137697/137697), 211.84 MiB | 30.75 MiB/s, done. | |
Resolving deltas: 100% (87732/87732), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-funcgen' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-funcgen.git' | |
Cloning into 'ensembl-funcgen'... | |
remote: Enumerating objects: 24, done. | |
remote: Counting objects: 100% (24/24), done. | |
remote: Compressing objects: 100% (19/19), done. | |
remote: Total 56460 (delta 4), reused 13 (delta 0), pack-reused 56436 | |
Receiving objects: 100% (56460/56460), 21.58 MiB | 15.40 MiB/s, done. | |
Resolving deltas: 100% (28073/28073), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-io' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-io.git' | |
Cloning into 'ensembl-io'... | |
remote: Enumerating objects: 3, done. | |
remote: Counting objects: 100% (3/3), done. | |
remote: Compressing objects: 100% (2/2), done. | |
remote: Total 7764 (delta 1), reused 1 (delta 1), pack-reused 7761 | |
Receiving objects: 100% (7764/7764), 2.85 MiB | 4.54 MiB/s, done. | |
Resolving deltas: 100% (3855/3855), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-orm' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-orm.git' | |
Cloning into 'ensembl-orm'... | |
remote: Enumerating objects: 2765, done. | |
remote: Total 2765 (delta 0), reused 0 (delta 0), pack-reused 2765 | |
Receiving objects: 100% (2765/2765), 385.40 KiB | 1.28 MiB/s, done. | |
Resolving deltas: 100% (1491/1491), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-tools' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-tools.git' | |
Cloning into 'ensembl-tools'... | |
remote: Enumerating objects: 2844, done. | |
remote: Total 2844 (delta 0), reused 0 (delta 0), pack-reused 2844 | |
Receiving objects: 100% (2844/2844), 1.17 MiB | 2.44 MiB/s, done. | |
Resolving deltas: 100% (1557/1557), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-variation' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-variation.git' | |
Cloning into 'ensembl-variation'... | |
remote: Enumerating objects: 59775, done. | |
remote: Total 59775 (delta 0), reused 0 (delta 0), pack-reused 59775 | |
Receiving objects: 100% (59775/59775), 123.54 MiB | 28.51 MiB/s, done. | |
Resolving deltas: 100% (34030/34030), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'ensembl-webcode' | |
* Cloning from remote 'https://github.com/Ensembl/ensembl-webcode.git' | |
Cloning into 'ensembl-webcode'... | |
remote: Enumerating objects: 12, done. | |
remote: Counting objects: 100% (12/12), done. | |
remote: Compressing objects: 100% (12/12), done. | |
remote: Total 292873 (delta 5), reused 1 (delta 0), pack-reused 292861 | |
Receiving objects: 100% (292873/292873), 151.85 MiB | 27.59 MiB/s, done. | |
Resolving deltas: 100% (208351/208351), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
* Working with module 'public-plugins' | |
* Cloning from remote 'https://github.com/Ensembl/public-plugins.git' | |
Cloning into 'public-plugins'... | |
remote: Enumerating objects: 20, done. | |
remote: Counting objects: 100% (20/20), done. | |
remote: Compressing objects: 100% (14/14), done. | |
remote: Total 111459 (delta 6), reused 9 (delta 4), pack-reused 111439 | |
Receiving objects: 100% (111459/111459), 194.60 MiB | 31.23 MiB/s, done. | |
Resolving deltas: 100% (70736/70736), done. | |
* Checking out branch 'release/94' | |
* Skipping checkout as we are already on release/94 | |
* Enabling git hooks | |
[www@225b4e4738d8 linuxbrew-automation-2.0.0]$ |
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