dodir_pyrom.py

gistfile1.txt

import os
import sys
import glob

def system(cmd):
    print >>sys.stderr, cmd
    os.system(cmd)

# dodir_pyro.py directory

directory = sys.argv[1]

owd = os.getcwd()
os.chdir(directory)

for ln in sys.stdin:
    cols = ln.split("\t")

    stub = cols[0]

    cmd = "mpirun PyroDist -in %s_20000.dat -out %s >%s.pdout" % (stub, stub, stub)
    print cmd
    system(cmd)

    cmd = "FCluster -in %s.fdist -out %s > %s.fcout" % (stub, stub, stub)
    print cmd
    system(cmd)

    cmd = "mpirun -np 8 PyroNoiseM -din %s.dat -out %s_s60_c01 -lin %s.list -s 60.0 -c 0.01 > %s_s60_c01.pnout" % (stub, stub, stub, stub)
    print cmd
    system(cmd)