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June 30, 2021 16:09
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Merge long list of PLINK files
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| ls ../bgn | sed 's/.bed//g' | sed 's/.bim//g' | sed 's/.fam//g' | sort -u | awk '{print "../bgn/"$1".bed","../bgn/"$1".bim","../bgn/"$1".fam"}' > mergelist.txt | |
| ../plink --merge-list mergelist.txt --maf 0.00000001 --geno 0.02 --make-bed --out pgbd_nomono_goodgeno | |
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