Created
October 19, 2018 09:25
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plot image with alpha, with mask
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import matplotlib.pyplot as plt | |
import matplotlib as mpl | |
from matplotlib.patches import Rectangle | |
import pydicom | |
import numpy as np | |
import torchvision as tv | |
img = pydicom.dcmread('/Users/nikhil/workspace/src/rsna/dcm/00aecb01-a116-45a2-956c-08d2fa55433f.dcm').pixel_array | |
img = np.expand_dims(img, -1) | |
img_pil = tv.transforms.functional.to_pil_image(img) | |
box = 288.0, 322., 94., 135.0 | |
x, y, w, h = box | |
angle = 0 | |
patch = Rectangle((x,y), w, h, color='red', ls='dashed', angle=angle, fill=False, lw=4, joinstyle='round', alpha=0.6) | |
target = np.zeros((1024, 1024)) | |
xi,yi,hi,wi = int(x), int(y), int(h), int(w) | |
for r in range(xi, xi+wi+1): | |
for c in range(yi, yi+hi+1): | |
target[r,c]=255 | |
target = np.expand_dims(target, -1) | |
target = target.astype('uint8') | |
target = tv.transforms.functional.to_pil_image(target) | |
fig, ax = plt.subplots() | |
ax.plot(target) | |
ax.imshow(target) | |
ax.add_patch(patch) | |
plt.show() | |
fig, ax = plt.subplots() | |
ax.imshow(img_pil) | |
ax.imshow(target, alpha=0.5) | |
plt.show() | |
fig, ax = plt.subplots() | |
ax.imshow(img_pil) | |
ax.imshow(target, alpha=0.1) | |
plt.show() |
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