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nikhilRP/load.scala

Last active August 29, 2015 14:14
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Loading adam file from s3
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load.scala
import org.bdgenomics.formats.avro.AlignmentRecord
import org.bdgenomics.adam.rdd.ADAMContext._
import org.bdgenomics.adam.projections.{ AlignmentRecordField, Projection }
import org.apache.spark.rdd.RDD
var adamFile = "/user/nikhilrp/encoded-data/ENCFF000YGV.adam"
val reads = sc.loadParquetAlignments(adamFile)
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