private.xml

<?xml version="1.0"?>
<root>
  <appdef>
    <appname>ATOM</appname>
    <equal>com.github.atom</equal>
  </appdef>
  <list>
    <item>
      <name>Command_R to Control_L (TERMINAL ONLY)</name>
      <only>TERMINAL</only>
      <identifier>private.remap.app_term_commandR_2_to_controlL_2</identifier>
      <autogen>--KeyToKey--
        KeyCode::COMMAND_R,
        KeyCode::CONTROL_L
      </autogen>
    </item>
    <item>
        <name>Control_L+Space to Command_R+Space (TERMINAL ONLY)</name>
        <only>TERMINAL</only>
        <identifier>private.remap.app_term_controlL_space2_to_commandR_space2</identifier>
        <autogen>--KeyToKey--
            KeyCode::SPACE, ModifierFlag::CONTROL_L,
            KeyCode::SPACE, ModifierFlag::COMMAND_R
        </autogen>
    </item>

    <item>
      <name>Command_R to Control_L (ATOM ONLY)</name>
      <only>ATOM</only>
      <identifier>private.remap.app_atom_commandR_2_to_controlL_2</identifier>
      <autogen>--KeyToKey--
        KeyCode::COMMAND_R,
        KeyCode::CONTROL_L
      </autogen>
    </item>
    <item>
        <name>Control_L+Space to Command_R+Space (ATOM ONLY)</name>
        <only>ATOM</only>
        <identifier>private.remap.app_atom_controlL_space2_to_commandR_space2</identifier>
        <autogen>--KeyToKey--
            KeyCode::SPACE, ModifierFlag::CONTROL_L,
            KeyCode::SPACE, ModifierFlag::COMMAND_R
        </autogen>
    </item>
  </list>
</root>