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nilesh-tawari/DNAnexus_useful_snippets.sh

Created February 23, 2018 04:25
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Code snippets for DNAnexus
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DNAnexus_useful_snippets.sh
# Deploy a python package on DNAnexus
## Step 1: find installation path of module
python
import imp
imp.find_module("pandas")
## Step 2: copy module and put in tarball
cp -r /mnt/software/unstowable/anaconda/lib/python2.7/site-packages/pandas .
tar -zcvf pandas.tar.gz pandas/
## in applet keep in resources/home/dnanexus and add following line to code.sh
export PYTHONPATH=/home/dnanexus:$PYTHONPATH
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