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Last active August 29, 2015 14:00
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bam2x aggregation result plot v0.0

bam2x aggregation result render plot aggregation near tss or tts

<!DOCTYPE html>
<meta charset="utf-8">
<script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script>
<script src="http://nvd3.org/assets/js/nv.d3.js"></script>
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
</style>
<link rel="stylesheet" href="mydiv.css">
<link rel="stylesheet" href="http://nvd3.org/assets/css/nv.d3.css">
<div class="myDiv" style="position:absolute; float: left; height:100%; width:210px ; border: 1px;background-color: aliceblue" id="left">
<h2>render bam2x</h2>
<div id="input">
<input type="file" id="file" />
<h2>Download Demo File</h2>
<a href="sample.out">example file</a>
</div>
</div>
<div id="FIGURE" style=" margin-left: 210px ; height:100% ; background-color: white; border: 1px; text-align:center;" class="middle">
<div id="output" class="myDiv">
<h2>OUTPUT</h2>
<svg id="svg">
</svg>
</div>
</div>
</div>
<script>
function render(myData)
{
nv.addGraph( function() {
var width = nv.utils.windowSize().width - 40,
height = nv.utils.windowSize().height - 40;
var chart = nv.models.lineChart()
.margin({top: 20, right: 20, bottom: 20, left: 20})
.transitionDuration(350)
.useInteractiveGuideline(true)
.showLegend(true)
.showYAxis(true)
.showXAxis(true)
chart.xAxis //Chart x-axis settings
.axisLabel('Pos to TSS')
.tickFormat(d3.format(',r'));
chart.yAxis //Chart y-axis settings
.axisLabel('Mean Coverage or Gini')
.tickFormat(d3.format('.02f'));
console.log(myData);
console.log(chart);
d3.select('#svg')
.datum(myData)
.call(chart);
nv.utils.windowResize(function() { chart.update() });
return chart;
}
);
}
function parseCSV(text, lineTerminator, cellTerminator) {
//break the lines apart
var lines = text.split(lineTerminator);
var aggregation=[],gini=[]
for(var j = 1; j<lines.length; j++){
if(lines[j] != ""){
var d = lines[j].split(cellTerminator);
aggregation.push({x: parseInt(d[0]), y: parseFloat(d[1])});
gini.push({x: parseInt(d[0]), y: parseFloat(d[2])});
}}
return [
{
values: aggregation,
key: "Aggregation",
color: "#ff7f0e"
},
{
values: gini,
key: "Gini",
color: "#2ca02c"
},
];
}
function handleFileSelect(evt) {
var files = evt.target.files;
var file=files[0]
var reader = new FileReader();
reader.onloadend = (function(evt) {
render(parseCSV(evt.target.result,"\n","\t"));
});
reader.readAsText(file)
}
document.getElementById('file').addEventListener('change', handleFileSelect, false);
</script>
html,body{margin:5;padding:5;}
body {
font: 10px sans-serif;
}
/*.myDiv { width: 250px; height: 240px; padding: 0.5em; } */
input { size:200;}
svg {margin: 0 auto;}
.myDiv {
border:0px solid black;
margin-bottom: 1cm;
/*
-webkit-border-top-left-radius:6px;
-webkit-border-top-right-radius:6px;
-moz-border-radius-topleft:6px;
-moz-border-radius-topright:6px;
border-top-left-radius:6px;
border-top-right-radius:6px;
/*width:300px; */
font-size:8pt; /* or whatever */
/* background-color: aliceblue */
}
.myDiv h2 {
padding:4px;
color:#fff;
margin:0;
background-color:black;
font-size: 10pt; /* or whatever */
font-family:Arial;
}
.myDiv p {
font-family:Arial;
/*padding:4px; */
}
.middle h2 {
padding:4px;
color:#fff;
margin:0;
background-color:navy;
font-size: 10pt; /* or whatever */
font-family:Arial;
}
textarea {
width: 60%;
height: 60%;
border: 3px solid #cccccc;
padding: 3px;
font-family: Tahoma, sans-serif;
background-image: url(bg.gif);
background-position: bottom right;
background-repeat: no-repeat;
}
li:hover {
background-color: #FFFFCC;
}
td:hover {
background-color: #FFFFCC;
}
table {width:100px}
td {white-space:nowrap;overflow:hidden;width:100px}
pos_to_tts aggregation_mean gini_coefficient
-500 19.8451103398 0.968160340506
-499 20.2092475241 0.968717385255
-498 20.8113874471 0.969570277967
-497 21.37655638 0.970216706113
-496 21.82495303 0.970704370853
-495 22.1755246314 0.970976615057
-494 22.2932840811 0.97099735751
-493 22.3475782569 0.970898064501
-492 22.1542209343 0.97062654212
-491 22.1706206413 0.970652919049
-490 22.2401999809 0.970706353659
-489 22.404451804 0.970773647209
-488 22.381110085 0.970537873833
-487 22.4032735726 0.970486470591
-486 21.6373594879 0.969320707454
-485 21.6568480718 0.969150454956
-484 21.7332102028 0.969136130149
-483 21.7163009904 0.968991561848
-482 21.6865586091 0.968743300419
-481 21.7080852148 0.968602723876
-480 21.6212463777 0.968365951017
-479 21.5648823361 0.968175142502
-478 21.6145272745 0.968174178556
-477 21.5243448078 0.967968574843
-476 21.4094194822 0.967734549845
-475 20.8649173646 0.966865214195
-474 20.0637837149 0.965438574261
-473 19.7992230042 0.964873493304
-472 19.9115052702 0.964789928566
-471 19.945260007 0.964914981171
-470 19.7528898513 0.964603644789
-469 21.6580899914 0.967623856485
-468 21.7637168423 0.967646060655
-467 21.9030028978 0.967736344272
-466 19.1859058052 0.963220711191
-465 19.0783364647 0.963013534422
-464 19.0180874439 0.962810698853
-463 19.0142343088 0.962689450232
-462 18.6416902844 0.961979588904
-461 18.1053720982 0.96085947142
-460 18.2908957743 0.961133599272
-459 18.5281342547 0.961555961856
-458 18.6597777282 0.961684292344
-457 18.8140305066 0.961787924914
-456 18.9802566634 0.962162397863
-455 19.0573512085 0.962169209817
-454 19.1520555361 0.962174177469
-453 19.3079323632 0.96234161105
-452 19.476992644 0.962427619301
-451 19.4493838168 0.96225692257
-450 19.3528962201 0.962055941089
-449 19.4296723243 0.962147026912
-448 19.4304365825 0.96210495474
-447 19.5019584116 0.962115539833
-446 19.6556698405 0.962253672299
-445 19.6924179219 0.96209035993
-444 19.9014743814 0.962287997494
-443 20.077062701 0.962529133798
-442 20.2787631755 0.962840117951
-441 20.4600197433 0.962993408556
-440 19.7285609655 0.961557682043
-439 19.9094990924 0.9617857687
-438 19.9533165621 0.961796672082
-437 20.1448906155 0.961995827188
-436 20.4116485686 0.962140157179
-435 20.5267012706 0.962143630408
-434 20.7111104035 0.962189750265
-433 20.8469572971 0.962208610559
-432 21.1644428876 0.962454042882
-431 21.2499761169 0.962298943446
-430 21.3377702767 0.962256030162
-429 21.2007451517 0.962009723349
-428 21.4756870363 0.962280962018
-427 21.5539598128 0.962055949996
-426 21.6512116677 0.962074022195
-425 21.6874820877 0.961836598435
-424 21.6684393211 0.961510153689
-423 21.8108779416 0.961563698428
-422 21.9240199981 0.961595280633
-421 22.0458873356 0.961503937476
-420 22.070088845 0.961477913389
-419 22.1173136325 0.961422465358
-418 22.2360920931 0.961220824133
-417 22.0168136802 0.960702734785
-416 22.3059580295 0.960784333983
-415 22.4125402032 0.960603137848
-414 22.6716555743 0.960653514053
-413 22.7719326179 0.960655133635
-412 22.7706588542 0.960561760729
-411 22.533484062 0.959968458963
-410 22.4342260294 0.959613953628
-409 22.4971499538 0.959548170034
-408 22.5555838614 0.95957869402
-407 22.7044868325 0.959572544838
-406 22.6692672675 0.959376305895
-405 22.6786294303 0.95924958206
-404 22.7504060122 0.959198534276
-403 22.699455466 0.958964664362
-402 22.7183071681 0.958694176253
-401 22.8054007579 0.958733199369
-400 22.7803713021 0.958471976237
-399 23.027545139 0.958504838506
-398 22.8467025443 0.957991223011
-397 23.0226411489 0.957985627015
-396 23.0894818966 0.95796380271
-395 23.2497532083 0.957866374066
-394 23.3267522211 0.957734495092
-393 24.1960959144 0.959144202822
-392 25.6013756647 0.961135104777
-391 26.9308346336 0.962772823609
-390 28.2665032003 0.964184525804
-389 29.2077190077 0.965130680485
-388 29.686208324 0.965574226634
-387 29.5730662676 0.96537178003
-386 29.0144890616 0.964564436875
-385 29.128299844 0.964555506913
-384 29.2560901825 0.96460457114
-383 29.1944400217 0.96433552563
-382 29.1972741458 0.964141335529
-381 29.1057860714 0.963880680096
-380 29.7317772187 0.964207759594
-379 29.7899882177 0.964080879674
-378 29.704327612 0.963897959554
-377 30.1063911091 0.964122268744
-376 30.1209438589 0.964128246596
-375 30.3669713085 0.964199792824
-374 30.6304493201 0.9644323112
-373 31.0326720377 0.964979508637
-372 31.5541508773 0.965564710262
-371 33.7476355762 0.967635395186
-370 34.23777983 0.968049569708
-369 34.9427124797 0.968513379495
-368 35.3862688278 0.968742074505
-367 35.932012865 0.969058251582
-366 36.2209024615 0.969043170592
-365 36.38286151 0.968963863045
-364 35.7045186766 0.968186740265
-363 35.7908480082 0.968110530799
-362 35.8819539534 0.96798005232
-361 35.7931726268 0.967724774607
-360 35.9061554629 0.967598787219
-359 29.9722319524 0.961047598742
-358 30.0969971022 0.960895081928
-357 30.037639716 0.96060841516
-356 30.0810113683 0.960335520007
-355 30.2072095023 0.960211837282
-354 30.237111104 0.960154087039
-353 30.0909148807 0.959689320816
-352 30.2982517594 0.959737817354
-351 30.4311689966 0.959594034557
-350 30.6503518772 0.959376689381
-349 30.8015157787 0.959201357366
-348 30.8998821769 0.958990707184
-347 30.2746234436 0.957989531067
-346 29.6406075853 0.956690606236
-345 29.7153138235 0.956359227825
-344 29.5800082795 0.955883301405
-343 29.5972359329 0.955473436331
-342 29.7881094163 0.955440676799
-341 28.5809636022 0.953295812404
-340 28.2260293603 0.952458568948
-339 28.4739674553 0.952430239248
-338 28.9753845174 0.952881692607
-337 28.8446326784 0.952443232507
-336 28.7342610579 0.951812737778
-335 27.3278030761 0.94874410582
-334 27.4434608158 0.948579577948
-333 27.3146196223 0.947997039772
-332 27.1897270961 0.947411180754
-331 26.9698118014 0.946446669766
-330 27.229436678 0.946418387025
-329 27.4402764067 0.946516927685
-328 27.3928287106 0.946093493521
-327 27.6036684393 0.946057043043
-326 27.5996879279 0.945556191779
-325 27.6926726746 0.945222007564
-324 25.9837913575 0.941448383437
-323 26.7772505812 0.942893367677
-322 27.9415979365 0.944748979183
-321 29.5015125943 0.947254669498
-320 31.1606534408 0.949755483151
-319 32.7948603637 0.951937649171
-318 33.9979938222 0.95320685717
-317 34.5228162914 0.953624019498
-316 34.719676464 0.953751309128
-315 34.9642072413 0.953526016999
-314 35.2976467217 0.953502575454
-313 35.6222335446 0.9534121294
-312 35.9957965799 0.953424366003
-311 36.4922141197 0.953555373887
-310 36.5077540362 0.953312562647
-309 36.7305034551 0.953274015825
-308 37.0511097666 0.953010048652
-307 37.2551348597 0.952856730742
-306 37.7160462376 0.952972372131
-305 38.2174632997 0.953026447521
-304 38.1259752253 0.952410855055
-303 38.5293443302 0.952403169512
-302 38.4555615706 0.951758484638
-301 38.4823106073 0.951316209556
-300 38.6558927491 0.951126847949
-299 38.9007419673 0.950978188966
-298 39.2248511289 0.950899711868
-297 39.2674585231 0.950579365016
-296 39.459542082 0.950367625606
-295 39.8389644301 0.950318352244
-294 40.1373117218 0.950254787009
-293 40.5650097124 0.950292966061
-292 40.7126707639 0.950070190828
-291 41.0952775213 0.95006724906
-290 40.5416998376 0.94888373689
-289 36.4240359201 0.942595430091
-288 36.8994363596 0.942587370655
-287 33.0698977805 0.935465223438
-286 33.3666210235 0.935391711491
-285 33.6569754482 0.935400521116
-284 34.1067732382 0.935266967857
-283 34.3129000414 0.935077483718
-282 34.5827150272 0.935028150215
-281 34.7971212941 0.93491530811
-280 35.5143139191 0.935382820109
-279 35.0831130784 0.934016789547
-278 35.4038467662 0.933990855433
-277 35.625163201 0.933764346481
-276 35.531382352 0.932936117458
-275 35.8209725185 0.932687602799
-274 35.7232111582 0.931786237044
-273 35.0215266057 0.929535394702
-272 35.3159570742 0.929238388354
-271 35.5035187721 0.92905075898
-270 35.5707098048 0.928740771859
-269 35.0344234627 0.927060455452
-268 35.3273254148 0.926895180791
-267 35.5873005764 0.926698065346
-266 34.9514696048 0.924869621538
-265 34.9291150527 0.923877315568
-264 35.2142152024 0.923346134761
-263 35.570072923 0.923334917924
-262 35.9824539057 0.923431009767
-261 39.7878228195 0.929936884214
-260 40.1789637933 0.929721920563
-259 40.5157150591 0.929382613975
-258 40.792535745 0.92882347297
-257 40.6876413082 0.927773379059
-256 41.210234691 0.927844121103
-255 41.8439639525 0.927942682361
-254 42.7376046875 0.928737023035
-253 43.8901378849 0.929687211278
-252 44.1838677833 0.929415280297
-251 45.0040760437 0.929898589883
-250 45.5870458236 0.929998906648
-249 45.9702576187 0.929542585046
-248 46.3152565042 0.929061752376
-247 46.7642263478 0.928686414992
-246 47.5120529886 0.929022567856
-245 48.0659491131 0.928831177094
-244 48.5923000987 0.928637379145
-243 49.2775531 0.928613734527
-242 49.58367035 0.928074761148
-241 50.046364997 0.92790870283
-240 50.6714008216 0.92771256146
-239 50.3672579053 0.926143742625
-238 50.9417890011 0.926163338147
-237 50.7638123746 0.924977514129
-236 51.0392000764 0.924368557559
-235 51.2649746839 0.923671476001
-234 51.2964048021 0.922670853956
-233 51.6313091106 0.922174192647
-232 52.0465879056 0.921660755338
-231 52.6327739388 0.921364371165
-230 53.0809158361 0.920866153935
-229 52.6789478712 0.919280767809
-228 52.9218227558 0.918606748402
-227 53.2714390345 0.918074111325
-226 53.6605101423 0.917421970779
-225 54.1463872878 0.916902772689
-224 54.0394866732 0.915894183686
-223 54.4544470274 0.915536168999
-222 54.5476546827 0.914687158476
-221 54.8930993854 0.914141936346
-220 53.2907683979 0.910411462946
-219 53.9297200904 0.910191125862
-218 54.4284622488 0.909783877829
-217 55.0652803872 0.909498812512
-216 55.685507754 0.909199083456
-215 56.4115848804 0.908955321975
-214 57.641562908 0.909461335765
-213 57.2547527306 0.907750792584
-212 57.4065216699 0.906796196134
-211 57.9591121867 0.906528456087
-210 58.9735694042 0.90680117283
-209 59.7104416775 0.906539786865
-208 60.3346177117 0.906111953637
-207 60.7919307073 0.905531658755
-206 61.1198930039 0.904870102985
-205 61.7164920549 0.904350154694
-204 63.1090023246 0.905418154967
-203 64.1598891826 0.905644033452
-202 65.3129318855 0.905798678619
-201 66.4302136739 0.905904892627
-200 67.6064707194 0.906264999265
-199 68.605292488 0.906391688351
-198 69.5688946916 0.906449958313
-197 70.9436041143 0.90670589805
-196 72.1509091488 0.906941705093
-195 72.8367034997 0.906498326373
-194 73.6521988345 0.906262488161
-193 74.3847721555 0.90605256433
-192 75.5971085565 0.906318795988
-191 75.4366461803 0.904814429141
-190 76.5988281374 0.904837464057
-189 77.6185714741 0.904801851277
-188 79.3095564118 0.905335492673
-187 80.732223036 0.905662642131
-186 81.9602904181 0.905631256275
-185 82.1151163902 0.9043299669
-184 83.1660987804 0.903619560351
-183 83.8790879852 0.902870614452
-182 84.9942999077 0.902504125592
-181 86.4081775627 0.902428208169
-180 87.6860809477 0.902446695133
-179 88.5359679012 0.902208546127
-178 89.2885711556 0.901707186608
-177 90.4142597841 0.901564257518
-176 91.6472630004 0.90144364668
-175 94.2859599401 0.902637398667
-174 95.5623666529 0.902622883591
-173 96.7669967837 0.902383845287
-172 97.916313728 0.901952102865
-171 99.1868611279 0.901745857985
-170 100.948667325 0.901738821928
-169 102.615450753 0.901606916664
-168 104.10056364 0.901606535688
-167 105.540489762 0.901392111575
-166 106.172849728 0.900436817713
-165 107.352609623 0.9001326121
-164 108.463363373 0.899782508762
-163 110.019424896 0.899881895413
-162 111.322134828 0.899690086582
-161 111.9148489 0.898757293489
-160 113.752189281 0.898833250291
-159 116.197083081 0.899489918177
-158 118.400439448 0.899983661325
-157 120.99929943 0.900771915905
-156 122.430245518 0.900749693229
-155 121.687386555 0.898822763195
-154 123.792280992 0.899255081969
-153 125.240932395 0.899130408324
-152 126.526287297 0.898881982638
-151 127.807566156 0.898384902938
-150 128.770308569 0.897885665165
-149 129.92940165 0.89756599546
-148 131.207878228 0.897299587483
-147 133.194917683 0.89759355976
-146 134.951915422 0.897816005653
-145 136.59331911 0.89767919803
-144 139.149571697 0.898050819046
-143 140.274814508 0.897641326318
-142 142.444416139 0.897983140427
-141 143.612170812 0.897480656755
-140 145.218896284 0.897321562528
-139 146.978823679 0.897210147673
-138 148.511447951 0.897014333375
-137 150.265898163 0.896821486626
-136 152.394516447 0.897068627805
-135 154.48676878 0.897135264706
-134 158.326561157 0.897944887726
-133 162.213833073 0.89920981608
-132 165.714454033 0.900175981338
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