Upload gating files from a GE MRI scanner

upload_gating_files

#!/bin/bash

GATING_DIR=${GATING_DIR:-/usr/g/service/log/gating}
DEST_BASE=${DEST_BASE:-/mri-upload/ge_physio}
MAX_AGE_MINUTES=${3:-120}

study=$1
ppt=$2

if [[ "${study}" == "" ]] || [[ "${ppt}" == "" ]] || [[ "${study}" == "-h" ]]; then
    cat <<EOF
Usage: upload_gating_files <study> <participant> (<max_age_minutes>)

Moves files up to max_age_minutes old (default: 120) from
${GATING_DIR} into ${DEST_BASE}.
From there, they'll be put in /study/raw-data/<study>/<participant>/ge_physio.
EOF
    exit 1
fi

if [[ ! -d "${TARGET_DIR}" ]]; then
  mount /mri-upload
fi

matches=$(find "${GATING_DIR}" -type f -mmin -${MAX_AGE_MINUTES})

if [[ "${matches}" == "" ]]; then
    echo "No matching files found!"
    exit 2
fi

ppt_dir="ge_physio^${study}^${ppt}/"
mkdir -p "${DEST_BASE}/.${ppt_dir}"

for f in ${matches}; do
    echo "Moving ${f}"
    mv "${f}" "${DEST_BASE}/.${ppt_dir}"
done

mv "${DEST_BASE}/.${ppt_dir}" "${DEST_BASE}/${ppt_dir}"