bwa-alignment dockerfile

Dockerfile

FROM biocontainers/bwa:v0.7.17-3-deb_cv1

USER root
ENV DEBIAN_FRONTEND noninteractive


# seqtk
RUN apt-get update && (apt-get install -t buster-backports -y seqtk || apt-get install -y seqtk) && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/*

# samtools
RUN apt-get update && (apt-get install -t buster-backports -y samtools || apt-get install -y samtools) && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/*

# add nextflow tools
RUN apt-get update && apt-get install -y procps