mdshw5

rule screenshot_config:
    input: bam="{dataset}.sort.bam", bai="{dataset}.sort.bam.bai", calls="{dataset}.calls"
    output: batch="{dataset}.igv.batch"
    params: runtime="600", memory="1G", filename="{dataset}.alignments.png"
    run:
        import os.path
        batch_template = """load {bam}
preference SAM.SHOW_CENTER_LINE false
snapshotDirectory {directory}
genome hg38

matthewmueller

# OSX for Hackers (Mavericks/Yosemite)
#
# Source: https://gist.github.com/brandonb927/3195465

#!/bin/sh

# Some things taken from here
# https://github.com/mathiasbynens/dotfiles/blob/master/.osx

# Ask for the administrator password upfront

joemiller

#!/bin/bash
#
# this script will attempt to detect any ephemeral drives on an EC2 node and create a RAID-0 stripe
# mounted at /mnt. It should be run early on the first boot of the system.
#
# Beware, This script is NOT fully idempotent.
#

METADATA_URL_BASE="http://169.254.169.254/2012-01-12"

ozkatz

#!/usr/bin/env python
import os
import sys
import argparse

try:
    from boto.ec2.connection import EC2Connection
except ImportError:
    sys.stderr.write('Please install boto ( http://docs.pythonboto.org/en/latest/getting_started.html )\n')
    sys.exit(1)

dypsilon

Frontend Development

Attention: the list was moved to

https://github.com/dypsilon/frontend-dev-bookmarks

This page is not maintained anymore, please update your bookmarks.

---

rakhmad

Setting Up Clojure on OS X

I spent a lot of time trying to find a pretty optimal (for me) setup for Clojure… at the same time I was trying to dive in and learn it. This is never optimal; you shouldn't be fighting the environment while trying to learn something.

I feel like I went through a lot of pain searching Google, StackOverflow, blogs, and other sites for random tidbits of information and instructions.

This is a comprehensive "what I learned and what I ended up doing" that will hopefully be of use to others and act as a journal for myself if I ever have to do it again. I want to be very step-by-step and explain what's happening (and why) at each step.

Step 1: Getting Clojure (1.3)