Parent Tutorial:
- https://gist.github.com/mattiaslundberg/8620837
- merge with https://landoflinux.com/linux_install_archlinux_process.html
Muktware Tutorial:
Arch Linux Installation Guide:
Nam Pho npho
npho
/ cuda-pytorch.def
Created
September 28, 2021 06:36
Building a Singularity container to support CUDA and Pytorch.
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| Bootstrap: docker | |
| From: nvcr.io/nvidia/cuda:11.4.2-base-ubuntu20.04 | |
| %files | |
| cuda-pytorch.yml environment.yml | |
| %environment | |
| export PATH=/opt/conda/bin:${PATH} |
npho
/ compute.def
Created
September 28, 2021 05:17
How to build a Python conda environment in a Singularity container.
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| Bootstrap: docker | |
| From: continuumio/miniconda3 | |
| %environment | |
| export PATH=/opt/conda/bin:${PATH} | |
| %files | |
| compute.yml environment.yml |
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| #!/bin/sh | |
| #SBATCH --account=uwit | |
| #SBATCH --partition=compute | |
| #SBATCH --time=08:00:00 | |
| #SBATCH --signal=USR2 | |
| #SBATCH --ntasks=4 | |
| #SBATCH --mem=10G |
npho
/ scRNA-seq.Dockerfile
Last active
December 14, 2020 01:05
monocle3 and seurat for scRNA-seq analysis.
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| ## npho/monocle3 a Docker container for scRNA-seq lab work | |
| FROM rocker/geospatial:4.0.0 | |
| MAINTAINER "Nam Pho" npho@uw.edu | |
| RUN install2.r --error --deps TRUE devtools | |
| # monocle3 | |
| RUN R -e \ |
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| envs_dirs: | |
| - /gscratch/scrubbed/npho/conda/envs | |
| pkgs_dirs: | |
| - /gscratch/scrubbed/npho/conda/pkgs |
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| name: jlab | |
| channels: | |
| - defaults | |
| - bioconda | |
| - conda-forge | |
| dependencies: | |
| - python=3.7 | |
| - scrublet=0.2.1 | |
| - pip: | |
| - pandas==1.0.5 |
npho
/ installing-arch.md
Created
June 4, 2018 00:11
npho
/ keybase.md
Last active
June 30, 2019 01:52
I hereby claim:
- I am npho on github.
- I am npho (https://keybase.io/npho) on keybase.
- I have a public key ASAnv6Q46ED3MgjMg2XShjwwdNbnF1aSq-arEFyP9BqFEwo
To claim this, I am signing this object:
npho
/ screen-vertical-split.rb
Created
June 24, 2015 22:30
Brew formula for GNU screen with the vertical split
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| require 'formula' | |
| class ScreenVerticalSplit < Formula | |
| homepage 'http://www.gnu.org/software/screen/' | |
| url 'http://ftp.gnu.org/gnu/screen/screen-4.0.3.tar.gz' | |
| mirror 'http://ftp.gnu.org/gnu/screen/screen-4.0.3.tar.gz' | |
| sha256 '78f0d5b1496084a5902586304d4a73954b2bfe33ea13edceecf21615c39e6c77' | |
| head 'git://git.savannah.gnu.org/screen.git', :branch => 'master' |