Last active
March 27, 2022 04:14
-
-
Save ntessore/087f2621195520645103a368ae96ad10 to your computer and use it in GitHub Desktop.
plot HEALPix maps in 3D using matplotlib
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import numpy as np | |
import healpy as hp | |
import matplotlib.pyplot as plt | |
import matplotlib as mpl | |
def plot_hp3d(ax, m, r=1.0, vmin=None, vmax=None, cmap=None, norm=None, | |
alpha=None, shade=False, **kwargs): | |
m = np.asanyarray(m) | |
*nmaps, npix = m.shape | |
nside = hp.npix2nside(npix) | |
r = np.broadcast_to(r, nmaps) | |
if norm is None: | |
norm = mpl.colors.Normalize(vmin=vmin, vmax=vmax) | |
cm = plt.cm.get_cmap(cmap) | |
if alpha is not None: | |
alpha = np.broadcast_to(alpha, nmaps) | |
else: | |
alpha = np.full(nmaps, None) | |
out = np.empty(nmaps, dtype=object) | |
for i in np.ndindex(*nmaps): | |
pix = np.where(m[i] != hp.UNSEEN)[0] | |
ver = np.empty((4*len(pix), 3)) | |
tri = np.empty((2*len(pix), 3), dtype=int) | |
for j, p in enumerate(pix): | |
ver[4*j:4*(j+1)] = r[i]*hp.boundaries(nside, p, 1).T | |
tri[2*j:2*(j+1)] = [[4*j, 4*j+1, 4*j+3], [4*j+1, 4*j+2, 4*j+3]] | |
sur = ax.plot_trisurf(ver[:, 0], ver[:, 1], ver[:, 2], triangles=tri, | |
alpha=alpha[i], shade=shade, antialiased=False, | |
**kwargs) | |
col = cm(norm(m[i][pix])) | |
sur.set_fc(np.repeat(col, 2, axis=0)) | |
sur.set_ec('none') | |
sur.set_lw(0) | |
out[i] = sur | |
if not nmaps: | |
out = out.item() | |
return out | |
m = hp.read_map('cmb.fits') | |
m = hp.ud_grade(m, 64) | |
hp.mollview(m, min=-1e-4, max=1e-4, cmap='coolwarm') | |
plt.show() | |
ax = plt.subplot(111, projection='3d') | |
plot_hp3d(ax, m, vmin=-1e-4, vmax=1e-4, cmap='coolwarm', shade=True) | |
plt.show() |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
curl -o cmb.fits 'http://pla.esac.esa.int/pla-sl/data-action?MAP.MAP_OID=13491' |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment