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March 6, 2015 21:28
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<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> | |
<tables> | |
<!-- Locations of all fasta files under genome directory --> | |
<table name="all_fasta" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/all_fasta.loc" /> | |
</table> | |
<!-- Locations of indexes in the BFAST mapper format --> | |
<table name="bfast_indexes" comment_char="#"> | |
<columns>value, dbkey, formats, name, path</columns> | |
<file path="tool-data/bfast_indexes.loc" /> | |
</table> | |
<!-- Locations of protein (mega)blast databases --> | |
<table name="blastdb_p" comment_char="#"> | |
<columns>value, name, path</columns> | |
<file path="tool-data/blastdb_p.loc" /> | |
</table> | |
<!-- Locations of indexes in the BWA mapper format --> | |
<table name="bwa_indexes" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/bwa_index.loc" /> | |
</table> | |
<!-- Locations of indexes in the BWA color-space mapper format --> | |
<table name="bwa_indexes_color" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/bwa_index_color.loc" /> | |
</table> | |
<!-- Locations of MAF files that have been indexed with bx-python --> | |
<table name="indexed_maf_files"> | |
<columns>name, value, dbkey, species</columns> | |
<file path="tool-data/maf_index.loc" /> | |
</table> | |
<!-- Locations of fasta files appropriate for NGS simulation --> | |
<table name="ngs_sim_fasta" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/ngs_sim_fasta.loc" /> | |
</table> | |
<!-- Locations of PerM base index files --> | |
<table name="perm_base_indexes" comment_char="#"> | |
<columns>value, name, path</columns> | |
<file path="tool-data/perm_base_index.loc" /> | |
</table> | |
<!-- Locations of PerM color-space index files --> | |
<table name="perm_color_indexes" comment_char="#"> | |
<columns>value, name, path</columns> | |
<file path="tool-data/perm_color_index.loc" /> | |
</table> | |
<!-- Location of Picard dict file and other files --> | |
<table name="picard_indexes" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/picard_index.loc" /> | |
</table> | |
<!-- Location of SRMA dict file and other files --> | |
<table name="srma_indexes" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/picard_index.loc" /> | |
</table> | |
<!-- Location of Mosaik files --> | |
<table name="mosaik_indexes" comment_char="#"> | |
<columns>value, dbkey, name, path</columns> | |
<file path="tool-data/mosaik_index.loc" /> | |
</table> | |
<!-- Locations of indexes in the 2bit format --> | |
<table name="twobit" comment_char="#"> | |
<columns>value, path</columns> | |
<file path="tool-data/twobit.loc" /> | |
</table> | |
<table name="krakendb" comment_char="#"> | |
<columns>value ,dbkey, display_name, file_path</columns> | |
<file path="/Users/nturaga/Documents/Kraken_galaxy/tool-data/kraken_database.loc" /> | |
</table> | |
</tables> |
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