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My standard example data "lw": long-wave rhodopsin for a set of gall wasps (Cynipidae)
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| 8 484 | |
| Barbotinia_oraniensis TCTTGGTCCATTTATATGTGAGATATATGCAATGCTTGGCTCCCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGTTTAGCTGGCAAGCCATTAACTATCAGTGGTGCAATTCTGCGTATTGTTTTTCTCTGGGTCTGGGCGGTAGTTTGGACCATTGCACCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATCTAACTAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATCTACAGTTACTATTTCATCATTGCTGCTGTATCTGCTCATGAAAAAGCTATGCGTGAACAGGCCAAAAAGAWGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGCA | |
| Synergus_gallaepomiformis ACTAGGTCCATTTATATGTGAGATGTACGGAATGTTTGGCTCTCTATTCGGATGTGGTTCTATTTGGACAATGTGTATGATTGCTTTCGACCGATACAACGTTATCGTAAAAGGTTTAGTTGGCAAGCCCTTAACTATCAGTGGTGCAATCCTGCGCATTGCTTTTCTCTGGATCTGGGCAGTAATTTGGACAATCGCACCAATGATAGGATGGAATCGG---TACGTTCCGGAGGGTAACATGACAGCTTGCGGAACTGACTACCTGAGTAAGGATTGGTTCTCCAGGTCTTACATCATTGTATACAGCGTCTTTGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTACTTCATCATTGCTGCTGTATCTGCCCACGAGAAGGCTATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTTGCCAAGGTA | |
| Periclistus_brandtii TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGATCGATACAATGTTATCGTAAAGGGTCTGGCTGGCAAACCGCTATCTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGATAGGATGGAATCGG---TATGTTCCTGAAGGCAATTTGACAGCTTGCGGAACTGACTATCTGAGTAAGGATTGGTTGTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATCGCTGCTGTATCTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGATAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGTA | |
| Panteliella_bicolor TCTTGGTCCATTTTTATGTGAGATGTACGGAATGTTTGGCTCCCTTTTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGCTTGGCTGGCAAGCCCTTAACTATCACTGGTGCAATTCTGCGGATTGTTGGTCTCTGGGTTTGGGCAGTCATTTGGACCATTGCCCCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAATATGACAGCTTGTGGAACTGACTATCTGAATAAAGATTGGTTCTCGAGGTCTTATATACTTATATACAGTGTCTTTGTATACTTTATGCCACTTTTTCTCATTATATACAGTTACTATTTCATCATTGCTGCTGTATCTGCCCACGAAAAAGCAATGCGTGAACAAGCCAAAAAGATGAATGTAGCTTCTCTACGATCCTCCGACAACCAAAATACGAGTGCAGAACATAAGCTCGCAAAGGTT | |
| Plagiotrochus_quercusilicis ACATGGACCTTTTATGTGCGAGATGTACGCAATGTTTGGCTCCCTATTCGGATGCGGCTCCATTTGGACGATGTGTATGATAGCTTTCGACCGATACAATGTTATCGTGAAGGGATTAGCTGGAAAGCCGTTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTTTGGGCAGTAATTTGGACAATTGCACCAATGTTAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATTTGACTAAGGATTGGTTCTCGAGGTCTTACATACTTGTATATAGCGTCTTTGTATACTTCATGCCACTTTTCCTTATCATATACAGTTACTATTTCATCATTGCTGCTGTAACAGCTCATGAAAAAGCAATGCGTGAGCAGGCCAAAAAGATGAATGTGGCTTCCTTACGATCATCGGACAATCAAAATACAAGTGCTGAACATAAACTTGCCAAGGTA | |
| Andricus_curvator TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTAGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATAGCATTCGACCGATACAATGTCATTGTAAAAGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCCAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAACGTGGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAGCTCGCCAAGGTT | |
| Andricus_kollari TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGTCTCCATTTGGACAATGTGTATGATTGCTTTTGATCGATACAATGTCATTGTAAAGGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAATAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCTAAGGATTGGTTCTCGAGGTCTTACATTATTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTTATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTGGCTTCCCTACGATCATCTGACAATCAAAATACGAGTGCCGAACACAAGCTCGCTAAGGTT | |
| Diplolepis_rosae ----GGTCCATTCTTGTGTGAGATATACGCTTTACTTGGTTCTCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTTGATAGGTACAATGTAATAGTGAAAGGTTTGGCTGGGAAGCCCTTAACAATCACCGGTGCAATTATACGCATAATTGGCCTTTGGGTCTGGGCCATTATTTGGACTATTGCGCCAATGTTTGGATGGAATCGG---TATGTACCTGAAGGTAACATGACAGCTTGCGGAACTGATTATTTAAGTAAAGACTGGTTCTCGAGGTCTTACATCCTTGTATACAGTATCTTCGTATACTATATGCCGCTTTTCCTTATCATATACAGTTACTATTTTATCATCTCAGCTGTATCTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTAGCTTCTCTACGTTCATCTGACAATGCAAACACAAGTGCTGAGCATAAACTCGCAAAGGTA |
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| >Andricus_curvator | |
| LGPFMCEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAILRIVGLWVWAVIWTIAPMLGWNR-YVPEGNMTACGTDYLSKDWFSRSYILVYSIFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV | |
| >Andricus_kollari | |
| LGPFMCEIYAMLGSLFGCVSIWTMCMIAFDRYNVIVKGLAGKPLTISGAILRIVGLWVWAIIWTIAPMLGWNR-YVPEGNMTACGTDYLSKDWFSRSYIIVYSIFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV | |
| >Barbotinia_oraniensis | |
| LGPFICEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAILRIVFLWVWAVVWTIAPMIGWNR-YVPEGNMTACGTDYLTKDWFSRSYILVYSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKKNVASLRSSDNQNTSAEHKLAKA | |
| >Diplolepis_rosae | |
| -GPFLCEIYALLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTITGAIIRIIGLWVWAIIWTIAPMFGWNR-YVPEGNMTACGTDYLSKDWFSRSYILVYSIFVYYMPLFLIIYSYYFIISAVSAHEKAMREQAKKMNVASLRSSDNANTSAEHKLAKV | |
| >Panteliella_bicolor | |
| LGPFLCEMYGMFGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTITGAILRIVGLWVWAVIWTIAPMIGWNR-YVPEGNMTACGTDYLNKDWFSRSYILIYSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV | |
| >Periclistus_brandtii | |
| LGPFMCEIYAMLGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLSISGAILRIVGLWVWAVIWTIAPMIGWNR-YVPEGNLTACGTDYLSKDWLSRSYILVYSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV | |
| >Plagiotrochus_quercusilicis | |
| HGPFMCEMYAMFGSLFGCGSIWTMCMIAFDRYNVIVKGLAGKPLTISGAILRIVGLWVWAVIWTIAPMLGWNR-YVPEGNMTACGTDYLTKDWFSRSYILVYSVFVYFMPLFLIIYSYYFIIAAVTAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV | |
| >Synergus_gallaepomiformis | |
| LGPFICEMYGMFGSLFGCGSIWTMCMIAFDRYNVIVKGLVGKPLTISGAILRIAFLWIWAVIWTIAPMIGWNR-YVPEGNMTACGTDYLSKDWFSRSYIIVYSVFVYFMPLFLIIYSYYFIIAAVSAHEKAMREQAKKMNVASLRSSDNQNTSAEHKLAKV |
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| >Andricus_curvator | |
| TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTAGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATAGCATTCGACCGATACAATGTCATTGTAAAAGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCCAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAACGTGGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAGCTCGCCAAGGTT | |
| >Andricus_kollari | |
| TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGTCTCCATTTGGACAATGTGTATGATTGCTTTTGATCGATACAATGTCATTGTAAAGGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAATAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCTAAGGATTGGTTCTCGAGGTCTTACATTATTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTTATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTGGCTTCCCTACGATCATCTGACAATCAAAATACGAGTGCCGAACACAAGCTCGCTAAGGTT | |
| >Barbotinia_oraniensis | |
| TCTTGGTCCATTTATATGTGAGATATATGCAATGCTTGGCTCCCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGTTTAGCTGGCAAGCCATTAACTATCAGTGGTGCAATTCTGCGTATTGTTTTTCTCTGGGTCTGGGCGGTAGTTTGGACCATTGCACCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATCTAACTAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATCTACAGTTACTATTTCATCATTGCTGCTGTATCTGCTCATGAAAAAGCTATGCGTGAACAGGCCAAAAAGAWGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGCA | |
| >Diplolepis_rosae | |
| ----GGTCCATTCTTGTGTGAGATATACGCTTTACTTGGTTCTCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTTGATAGGTACAATGTAATAGTGAAAGGTTTGGCTGGGAAGCCCTTAACAATCACCGGTGCAATTATACGCATAATTGGCCTTTGGGTCTGGGCCATTATTTGGACTATTGCGCCAATGTTTGGATGGAATCGG---TATGTACCTGAAGGTAACATGACAGCTTGCGGAACTGATTATTTAAGTAAAGACTGGTTCTCGAGGTCTTACATCCTTGTATACAGTATCTTCGTATACTATATGCCGCTTTTCCTTATCATATACAGTTACTATTTTATCATCTCAGCTGTATCTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTAGCTTCTCTACGTTCATCTGACAATGCAAACACAAGTGCTGAGCATAAACTCGCAAAGGTA | |
| >Panteliella_bicolor | |
| TCTTGGTCCATTTTTATGTGAGATGTACGGAATGTTTGGCTCCCTTTTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGCTTGGCTGGCAAGCCCTTAACTATCACTGGTGCAATTCTGCGGATTGTTGGTCTCTGGGTTTGGGCAGTCATTTGGACCATTGCCCCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAATATGACAGCTTGTGGAACTGACTATCTGAATAAAGATTGGTTCTCGAGGTCTTATATACTTATATACAGTGTCTTTGTATACTTTATGCCACTTTTTCTCATTATATACAGTTACTATTTCATCATTGCTGCTGTATCTGCCCACGAAAAAGCAATGCGTGAACAAGCCAAAAAGATGAATGTAGCTTCTCTACGATCCTCCGACAACCAAAATACGAGTGCAGAACATAAGCTCGCAAAGGTT | |
| >Periclistus_brandtii | |
| TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGATCGATACAATGTTATCGTAAAGGGTCTGGCTGGCAAACCGCTATCTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGATAGGATGGAATCGG---TATGTTCCTGAAGGCAATTTGACAGCTTGCGGAACTGACTATCTGAGTAAGGATTGGTTGTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATCGCTGCTGTATCTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGATAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGTA | |
| >Plagiotrochus_quercusilicis | |
| ACATGGACCTTTTATGTGCGAGATGTACGCAATGTTTGGCTCCCTATTCGGATGCGGCTCCATTTGGACGATGTGTATGATAGCTTTCGACCGATACAATGTTATCGTGAAGGGATTAGCTGGAAAGCCGTTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTTTGGGCAGTAATTTGGACAATTGCACCAATGTTAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATTTGACTAAGGATTGGTTCTCGAGGTCTTACATACTTGTATATAGCGTCTTTGTATACTTCATGCCACTTTTCCTTATCATATACAGTTACTATTTCATCATTGCTGCTGTAACAGCTCATGAAAAAGCAATGCGTGAGCAGGCCAAAAAGATGAATGTGGCTTCCTTACGATCATCGGACAATCAAAATACAAGTGCTGAACATAAACTTGCCAAGGTA | |
| >Synergus_gallaepomiformis | |
| ACTAGGTCCATTTATATGTGAGATGTACGGAATGTTTGGCTCTCTATTCGGATGTGGTTCTATTTGGACAATGTGTATGATTGCTTTCGACCGATACAACGTTATCGTAAAAGGTTTAGTTGGCAAGCCCTTAACTATCAGTGGTGCAATCCTGCGCATTGCTTTTCTCTGGATCTGGGCAGTAATTTGGACAATCGCACCAATGATAGGATGGAATCGG---TACGTTCCGGAGGGTAACATGACAGCTTGCGGAACTGACTACCTGAGTAAGGATTGGTTCTCCAGGTCTTACATCATTGTATACAGCGTCTTTGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTACTTCATCATTGCTGCTGTATCTGCCCACGAGAAGGCTATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTTGCCAAGGTA |
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| 8 484 | |
| Barbotinia_oraniensis TCTTGGTCCATTTATATGTGAGATATATGCAATGCTTGGCTCCCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTC | |
| Synergus_gallaepomiformis ACTAGGTCCATTTATATGTGAGATGTACGGAATGTTTGGCTCTCTATTCGGATGTGGTTCTATTTGGACAATGTGTATGATTGCTTTC | |
| Periclistus_brandtii TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTC | |
| Panteliella_bicolor TCTTGGTCCATTTTTATGTGAGATGTACGGAATGTTTGGCTCCCTTTTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTC | |
| Plagiotrochus_quercusilicis ACATGGACCTTTTATGTGCGAGATGTACGCAATGTTTGGCTCCCTATTCGGATGCGGCTCCATTTGGACGATGTGTATGATAGCTTTC | |
| Andricus_curvator TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTAGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATAGCATTC | |
| Andricus_kollari TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGTCTCCATTTGGACAATGTGTATGATTGCTTTT | |
| Diplolepis_rosae ----GGTCCATTCTTGTGTGAGATATACGCTTTACTTGGTTCTCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTT | |
| GACCGATACAATGTTATCGTAAAAGGTTTAGCTGGCAAGCCATTAACTATCAGTGGTGCAATTCTGCGTATTGTTTTTCTCTGGGTCTGGGCGGTAGTTTGGACCATTGCACCAATGA | |
| GACCGATACAACGTTATCGTAAAAGGTTTAGTTGGCAAGCCCTTAACTATCAGTGGTGCAATCCTGCGCATTGCTTTTCTCTGGATCTGGGCAGTAATTTGGACAATCGCACCAATGA | |
| GATCGATACAATGTTATCGTAAAGGGTCTGGCTGGCAAACCGCTATCTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGA | |
| GACCGATACAATGTTATCGTAAAAGGCTTGGCTGGCAAGCCCTTAACTATCACTGGTGCAATTCTGCGGATTGTTGGTCTCTGGGTTTGGGCAGTCATTTGGACCATTGCCCCAATGA | |
| GACCGATACAATGTTATCGTGAAGGGATTAGCTGGAAAGCCGTTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTTTGGGCAGTAATTTGGACAATTGCACCAATGT | |
| GACCGATACAATGTCATTGTAAAAGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGT | |
| GATCGATACAATGTCATTGTAAAGGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAATAATTTGGACCATTGCACCAATGT | |
| GATAGGTACAATGTAATAGTGAAAGGTTTGGCTGGGAAGCCCTTAACAATCACCGGTGCAATTATACGCATAATTGGCCTTTGGGTCTGGGCCATTATTTGGACTATTGCGCCAATGT | |
| TAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATCTAACTAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTT | |
| TAGGATGGAATCGG---TACGTTCCGGAGGGTAACATGACAGCTTGCGGAACTGACTACCTGAGTAAGGATTGGTTCTCCAGGTCTTACATCATTGTATACAGCGTCTTTGTATACTT | |
| TAGGATGGAATCGG---TATGTTCCTGAAGGCAATTTGACAGCTTGCGGAACTGACTATCTGAGTAAGGATTGGTTGTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTT | |
| TAGGATGGAATCGG---TACGTTCCCGAGGGCAATATGACAGCTTGTGGAACTGACTATCTGAATAAAGATTGGTTCTCGAGGTCTTATATACTTATATACAGTGTCTTTGTATACTT | |
| TAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATTTGACTAAGGATTGGTTCTCGAGGTCTTACATACTTGTATATAGCGTCTTTGTATACTT | |
| TGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCCAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCATCTTTGTATACTT | |
| TGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCTAAGGATTGGTTCTCGAGGTCTTACATTATTGTATACAGCATCTTTGTATACTT | |
| TTGGATGGAATCGG---TATGTACCTGAAGGTAACATGACAGCTTGCGGAACTGATTATTTAAGTAAAGACTGGTTCTCGAGGTCTTACATCCTTGTATACAGTATCTTCGTATACTA | |
| CATGCCACTTTTCCTCATCATCTACAGTTACTATTTCATCATTGCTGCTGTATCTGCTCATGAAAAAGCTATGCGTGAACAGGCCAAAAAGAWGAATGTAGCTTCTCTACGATCATCC | |
| CATGCCACTTTTCCTCATCATATACAGTTACTACTTCATCATTGCTGCTGTATCTGCCCACGAGAAGGCTATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCC | |
| CATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATCGCTGCTGTATCTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCC | |
| TATGCCACTTTTTCTCATTATATACAGTTACTATTTCATCATTGCTGCTGTATCTGCCCACGAAAAAGCAATGCGTGAACAAGCCAAAAAGATGAATGTAGCTTCTCTACGATCCTCC | |
| CATGCCACTTTTCCTTATCATATACAGTTACTATTTCATCATTGCTGCTGTAACAGCTCATGAAAAAGCAATGCGTGAGCAGGCCAAAAAGATGAATGTGGCTTCCTTACGATCATCG | |
| TATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAACGTGGCTTCTCTACGATCATCC | |
| TATGCCACTTTTCCTCATCATATACAGTTACTATTTTATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTGGCTTCCCTACGATCATCT | |
| TATGCCGCTTTTCCTTATCATATACAGTTACTATTTTATCATCTCAGCTGTATCTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTAGCTTCTCTACGTTCATCT | |
| GACAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGCA | |
| GACAATCAAAATACGAGTGCTGAACATAAACTTGCCAAGGTA | |
| GATAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGTA | |
| GACAACCAAAATACGAGTGCAGAACATAAGCTCGCAAAGGTT | |
| GACAATCAAAATACAAGTGCTGAACATAAACTTGCCAAGGTA | |
| GACAATCAAAATACGAGTGCTGAACATAAGCTCGCCAAGGTT | |
| GACAATCAAAATACGAGTGCCGAACACAAGCTCGCTAAGGTT | |
| GACAATGCAAACACAAGTGCTGAGCATAAACTCGCAAAGGTA |
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| #NEXUS | |
| [2000-04-10] | |
| Begin Data; | |
| Dimensions Ntax=8 Nchar=484; | |
| Format Missing=? Gap=- Datatype=Dna; | |
| Matrix | |
| Barbotinia_oraniensis TCTTGGTCCATTTATATGTGAGATATATGCAATGCTTGGCTCCCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGTTTAGCTGGCAAGCCATTAACTATCAGTGGTGCAATTCTGCGTATTGTTTTTCTCTGGGTCTGGGCGGTAGTTTGGACCATTGCACCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATCTAACTAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATCTACAGTTACTATTTCATCATTGCTGCTGTATCTGCTCATGAAAAAGCTATGCGTGAACAGGCCAAAAAGAWGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGCA | |
| Synergus_gallaepomiformis ACTAGGTCCATTTATATGTGAGATGTACGGAATGTTTGGCTCTCTATTCGGATGTGGTTCTATTTGGACAATGTGTATGATTGCTTTCGACCGATACAACGTTATCGTAAAAGGTTTAGTTGGCAAGCCCTTAACTATCAGTGGTGCAATCCTGCGCATTGCTTTTCTCTGGATCTGGGCAGTAATTTGGACAATCGCACCAATGATAGGATGGAATCGG---TACGTTCCGGAGGGTAACATGACAGCTTGCGGAACTGACTACCTGAGTAAGGATTGGTTCTCCAGGTCTTACATCATTGTATACAGCGTCTTTGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTACTTCATCATTGCTGCTGTATCTGCCCACGAGAAGGCTATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAACTTGCCAAGGTA | |
| Periclistus_brandtii TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGATCGATACAATGTTATCGTAAAGGGTCTGGCTGGCAAACCGCTATCTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGATAGGATGGAATCGG---TATGTTCCTGAAGGCAATTTGACAGCTTGCGGAACTGACTATCTGAGTAAGGATTGGTTGTCGAGGTCTTACATTCTTGTATACAGCGTCTTCGTATACTTCATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATCGCTGCTGTATCTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAATGTAGCTTCTCTACGATCATCCGATAATCAAAATACGAGTGCTGAACATAAACTCGCCAAGGTA | |
| Panteliella_bicolor TCTTGGTCCATTTTTATGTGAGATGTACGGAATGTTTGGCTCCCTTTTCGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTCGACCGATACAATGTTATCGTAAAAGGCTTGGCTGGCAAGCCCTTAACTATCACTGGTGCAATTCTGCGGATTGTTGGTCTCTGGGTTTGGGCAGTCATTTGGACCATTGCCCCAATGATAGGATGGAATCGG---TACGTTCCCGAGGGCAATATGACAGCTTGTGGAACTGACTATCTGAATAAAGATTGGTTCTCGAGGTCTTATATACTTATATACAGTGTCTTTGTATACTTTATGCCACTTTTTCTCATTATATACAGTTACTATTTCATCATTGCTGCTGTATCTGCCCACGAAAAAGCAATGCGTGAACAAGCCAAAAAGATGAATGTAGCTTCTCTACGATCCTCCGACAACCAAAATACGAGTGCAGAACATAAGCTCGCAAAGGTT | |
| Plagiotrochus_quercusilicis ACATGGACCTTTTATGTGCGAGATGTACGCAATGTTTGGCTCCCTATTCGGATGCGGCTCCATTTGGACGATGTGTATGATAGCTTTCGACCGATACAATGTTATCGTGAAGGGATTAGCTGGAAAGCCGTTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGACTCTGGGTTTGGGCAGTAATTTGGACAATTGCACCAATGTTAGGATGGAATCGG---TACGTTCCCGAGGGCAACATGACAGCTTGTGGAACTGACTATTTGACTAAGGATTGGTTCTCGAGGTCTTACATACTTGTATATAGCGTCTTTGTATACTTCATGCCACTTTTCCTTATCATATACAGTTACTATTTCATCATTGCTGCTGTAACAGCTCATGAAAAAGCAATGCGTGAGCAGGCCAAAAAGATGAATGTGGCTTCCTTACGATCATCGGACAATCAAAATACAAGTGCTGAACATAAACTTGCCAAGGTA | |
| Andricus_curvator TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTAGGCTCCCTATTCGGATGTGGCTCCATTTGGACAATGTGTATGATAGCATTCGACCGATACAATGTCATTGTAAAAGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAGTAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCCAAGGATTGGTTCTCGAGGTCTTACATTCTTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTCATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGTGAACAGGCCAAAAAGATGAACGTGGCTTCTCTACGATCATCCGACAATCAAAATACGAGTGCTGAACATAAGCTCGCCAAGGTT | |
| Andricus_kollari TCTTGGTCCATTTATGTGTGAGATCTACGCAATGCTTGGCTCCCTATTCGGATGTGTCTCCATTTGGACAATGTGTATGATTGCTTTTGATCGATACAATGTCATTGTAAAGGGTTTAGCTGGCAAGCCACTAACTATCAGTGGTGCAATTCTGCGCATTGTTGGTCTCTGGGTCTGGGCAATAATTTGGACCATTGCACCAATGTTGGGCTGGAATCGG---TATGTTCCCGAGGGCAACATGACAGCATGTGGAACTGACTATCTGTCTAAGGATTGGTTCTCGAGGTCTTACATTATTGTATACAGCATCTTTGTATACTTTATGCCACTTTTCCTCATCATATACAGTTACTATTTTATCATTGCTGCTGTAACTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTGGCTTCCCTACGATCATCTGACAATCAAAATACGAGTGCCGAACACAAGCTCGCTAAGGTT | |
| Diplolepis_rosae ----GGTCCATTCTTGTGTGAGATATACGCTTTACTTGGTTCTCTATTTGGATGTGGCTCCATTTGGACAATGTGTATGATTGCTTTTGATAGGTACAATGTAATAGTGAAAGGTTTGGCTGGGAAGCCCTTAACAATCACCGGTGCAATTATACGCATAATTGGCCTTTGGGTCTGGGCCATTATTTGGACTATTGCGCCAATGTTTGGATGGAATCGG---TATGTACCTGAAGGTAACATGACAGCTTGCGGAACTGATTATTTAAGTAAAGACTGGTTCTCGAGGTCTTACATCCTTGTATACAGTATCTTCGTATACTATATGCCGCTTTTCCTTATCATATACAGTTACTATTTTATCATCTCAGCTGTATCTGCTCACGAAAAAGCAATGCGCGAACAGGCCAAAAAGATGAACGTAGCTTCTCTACGTTCATCTGACAATGCAAACACAAGTGCTGAGCATAAACTCGCAAAGGTA | |
| ; | |
| End; | |
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| (Barbotinia_oraniensis:0.024384,Synergus_gallaepomiformis:0.061161,((Periclistus_brandtii:0.038375,(Panteliella_bicolor:0.051602,Diplolepis_rosae:0.140942):0.015801):0.004076,(Plagiotrochus_quercusilicis:0.062624,(Andricus_curvator:0.007768,Andricus_kollari:0.028308):0.031033):0.009141):0.008730); |
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| #NEXUS | |
| Begin trees; [Treefile saved Fri Jan 6 12:50:54 2006] | |
| [! | |
| >Data file = /home/johan/doc/Data/lw.nex | |
| >Heuristic search settings: | |
| > Optimality criterion = likelihood | |
| > Likelihood settings: | |
| > Transition/transversion ratio = 2 (kappa = 4.0971953) | |
| > Assumed nucleotide frequencies (empirical frequencies): | |
| > A=0.26078 C=0.20447 G=0.22320 T=0.31154 | |
| > Among-site rate variation: | |
| > Assumed proportion of invariable sites = none | |
| > Distribution of rates at variable sites = equal | |
| > These settings correspond to the HKY85 model | |
| > Number of distinct data patterns under this model = 112 | |
| > Molecular clock not enforced | |
| > Starting branch lengths obtained using Rogers-Swofford approximation | |
| > method | |
| > Trees with approximate likelihoods 5% or further from the target score | |
| > are rejected without additional iteration | |
| > Branch-length optimization = one-dimensional Newton-Raphson with pass | |
| > limit=20, delta=1e-06 | |
| > -ln L (unconstrained) = unavailable due to missing-data and/or | |
| > ambiguities | |
| > Starting tree(s) obtained via stepwise addition | |
| > Addition sequence: as-is | |
| > Number of trees held at each step during stepwise addition = 1 | |
| > Branch-swapping algorithm: tree-bisection-reconnection (TBR) | |
| > Steepest descent option not in effect | |
| > Initial 'MaxTrees' setting = 100 | |
| > Branches collapsed (creating polytomies) if branch length is less than or | |
| > equal to 1e-08 | |
| > 'MulTrees' option in effect | |
| > Topological constraints not enforced | |
| > Trees are unrooted | |
| > | |
| >Heuristic search completed | |
| > Total number of rearrangements tried = 116 | |
| > Score of best tree(s) found = 1698.17225 | |
| > Number of trees retained = 1 | |
| > Time used = <1 sec (CPU time = 0.15 sec) | |
| ] | |
| tree PAUP_1 = [&U] (Barbotinia_oraniensis:0.024384,Synergus_gallaepomiformis:0.061161,((Periclistus_brandtii:0.038375,(Panteliella_bicolor:0.051602,Diplolepis_rosae:0.140942):0.015801):0.004076,(Plagiotrochus_quercusilicis:0.062624,(Andricus_curvator:0.007768,Andricus_kollari:0.028308):0.031033):0.009141):0.008730); | |
| End; |
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