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obenshaindw/Reheader a VCF file

Last active August 29, 2015 14:14
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Reheader VCF
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Reheader a VCF file
/usr/bin/htslib/bcftools view -H vcf_with_bad_header.vcf > vcf_header.vcf
vim vcf_header.vcf
#Make changes to header
/usr/bin/htslib/bcftools/bcftools reheader -h vcf_header vcf_with_bad_header.vcf -o reheadered.vcf
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