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obenshaindw/Fix Chromosome Name in a VCF

Last active August 29, 2015 14:14
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Fix Chromosome Name in VCF
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Fix Chromosome Name in a VCF
/usr/bin/htslib/bcftools/bcftools view vcf_with_chr.vcf | sed "s/chr//g" | /usr/bin/htslib/htslib/bgzip -c > BCM_hg19.reheader.no_chr.vcf.gz
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