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Split VCF by Chromosome
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seq 1 22 | xargs -n1 -P4 -I {} /usr/bin/vcftools/vcftools_0.1.11/bin/vcftools --gzvcf largevcf.vcf.gz --chr {} --recode --recode-INFO-all --out /split_by_chr/largevcf.chr{} |
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Very nice. for chr1 vs 1 you can replace the beginning with
seq -f "chr%1g" 22