Created
September 21, 2015 17:12
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(partial) EasyBuild log for failed build of /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.3.0-py2.6.egg/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb (PR #1913)
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| == 2015-09-21 19:03:30,491 main.ConfigureMake INFO This is EasyBuild 2.3.0 (framework: 2.3.0, easyblocks: 2.3.0) on host j3l02. | |
| == 2015-09-21 19:03:30,491 main.ConfigureMake INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/lib/python2.6/site-packages/easybuild_easyblocks-2.3.0-py2.6.egg/easybuild/easyblocks/generic/configuremake.pyc) | |
| == 2015-09-21 19:03:30,492 main.ConfigureMake INFO Build dir set to /dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0 | |
| == 2015-09-21 19:03:30,493 main.ConfigureMake INFO Install dir set to /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenBLAS/0.2.13-LAPACK-3.5.0 | |
| == 2015-09-21 19:03:30,493 main.ConfigureMake INFO Init completed for application name OpenBLAS version 0.2.13 | |
| == 2015-09-21 19:03:30,494 main.easyblock INFO Obtained application instance of for OpenBLAS (easyblock: ConfigureMake) | |
| == 2015-09-21 19:03:30,495 main.easyconfig.easyconfig WARNING Unable to resolve template value USE_THREAD=1 PREFIX=%(installdir)s with dict {'nameletterlower': 'o', 'versionsuffix': '-LAPACK-3.5.0', 'toolchain_name': 'GCC', 'namelower': 'openblas', 'version_minor': '2', 'name': 'OpenBLAS', 'versionprefix': '', 'nameletter': 'O', 'version_major': '0', 'version_major_minor': '0.2', 'version': '0.2.13', 'toolchain_version': '4.8.4'} | |
| == 2015-09-21 19:03:30,495 main.ConfigureMake INFO building and installing Toolchain/GCC/4.8.4/OpenBLAS/0.2.13-LAPACK-3.5.0... | |
| == 2015-09-21 19:03:30,496 main.ConfigureMake INFO fetching files... | |
| == 2015-09-21 19:03:30,496 main.ConfigureMake INFO Starting fetch step | |
| == 2015-09-21 19:03:30,501 main.ConfigureMake INFO Running method fetch_step part of step fetch | |
| == 2015-09-21 19:03:30,501 main.ConfigureMake WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2015-09-21 19:03:30,502 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,545 main.ConfigureMake INFO Found file v0.2.13.tar.gz at /usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz | |
| == 2015-09-21 19:03:30,546 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,549 main.ConfigureMake INFO Found file lapack-3.5.0.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz | |
| == 2015-09-21 19:03:30,550 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,554 main.ConfigureMake INFO Found file large.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz | |
| == 2015-09-21 19:03:30,555 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,558 main.ConfigureMake INFO Found file timing.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz | |
| == 2015-09-21 19:03:30,559 main.ConfigureMake INFO Added sources: [{'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0', 'name': 'v0.2.13.tar.gz', 'checksum': None}, {'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz', 'cmd': None, 'finalpath': '/dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0', 'name': 'lapack-3.5.0.tgz', 'checksum': None}, {'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz', 'cmd': None, 'finalpath': '/dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0', 'name': 'large.tgz', 'checksum': None}, {'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz', 'cmd': None, 'finalpath': '/dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0', 'name': 'timing.tgz', 'checksum': None}] | |
| == 2015-09-21 19:03:30,560 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,563 main.ConfigureMake INFO Found file lapack-3.5.0.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz | |
| == 2015-09-21 19:03:30,563 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,566 main.ConfigureMake INFO Found file large.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz | |
| == 2015-09-21 19:03:30,567 main.filetools INFO Command eb found at /usr/local/software/juropa3/Stage4/software/Core/EasyBuild/2.3.0/bin/eb | |
| == 2015-09-21 19:03:30,569 main.ConfigureMake INFO Found file timing.tgz at /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz | |
| == 2015-09-21 19:03:30,570 main.ConfigureMake INFO Added patches: [{'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz', 'copy': '.', 'name': 'lapack-3.5.0.tgz', 'checksum': None}, {'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz', 'copy': '.', 'name': 'large.tgz', 'checksum': None}, {'path': '/usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz', 'copy': '.', 'name': 'timing.tgz', 'checksum': None}] | |
| == 2015-09-21 19:03:30,597 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz: 22eb959c1036ebd64e196cd2c026871e | |
| == 2015-09-21 19:03:30,751 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz: b1d3e3e425b2e44a06760ff173104bdf | |
| == 2015-09-21 19:03:30,760 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz: 5d138a84f302fd6804e4fab4b338cb18 | |
| == 2015-09-21 19:03:30,791 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz: 2025bee0fecccc792938978d857472f4 | |
| == 2015-09-21 19:03:30,810 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz: b1d3e3e425b2e44a06760ff173104bdf | |
| == 2015-09-21 19:03:30,810 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz: 5d138a84f302fd6804e4fab4b338cb18 | |
| == 2015-09-21 19:03:30,813 main.ConfigureMake INFO md5 checksum for /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz: 2025bee0fecccc792938978d857472f4 | |
| == 2015-09-21 19:03:30,827 main.ConfigureMake INFO Setting parallelism: 32 | |
| == 2015-09-21 19:03:30,828 main.ConfigureMake INFO Checking dirs that need to be created: ['/usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenBLAS', '/usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenBLAS'] | |
| == 2015-09-21 19:03:30,832 main.filetools INFO Creating directory /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenBLAS (parents: True, set_gid: True, sticky: True) | |
| == 2015-09-21 19:03:30,835 main.filetools INFO Adjusting permissions recursively for /usr/local/software/juropa3/Stage4/software/Toolchain/GCC/4.8.4/OpenBLAS | |
| == 2015-09-21 19:03:30,836 main.filetools INFO Creating directory /usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenBLAS (parents: True, set_gid: True, sticky: True) | |
| == 2015-09-21 19:03:30,838 main.filetools INFO Adjusting permissions recursively for /usr/local/software/juropa3/Stage4/modules/all/Toolchain/GCC/4.8.4/OpenBLAS | |
| == 2015-09-21 19:03:30,839 main.ConfigureMake INFO creating build dir, resetting environment... | |
| == 2015-09-21 19:03:30,840 main.ConfigureMake INFO Starting ready step | |
| == 2015-09-21 19:03:30,845 main.ConfigureMake INFO Running method check_readiness_step part of step ready | |
| == 2015-09-21 19:03:30,953 main.ConfigureMake WARNING Loaded modules detected: ['Stages/.Stage4', 'EasyBuild/2.3.0', 'Developers/InstallSoftware', 'bzip2/1.0.6', 'zlib/1.2.8', 'libreadline/6.3', 'ncurses/5.9', 'Tcl/8.6.3', 'SQLite/3.8.8.1', 'Tk/8.6.3-no-X11', 'Python/2.7.9-bare'] | |
| == 2015-09-21 19:03:31,058 main.ConfigureMake INFO Running method make_builddir part of step ready | |
| == 2015-09-21 19:03:31,058 main.filetools INFO Creating directory /dev/shm/swmanage/OpenBLAS/0.2.13/GCC-4.8.4-LAPACK-3.5.0 (parents: True, set_gid: True, sticky: True) | |
| == 2015-09-21 19:03:31,059 main.filetools INFO Adjusting permissions recursively for /dev/shm/swmanage/OpenBLAS | |
| == 2015-09-21 19:03:31,060 main.ConfigureMake INFO Running method env_reset_changes part of step ready | |
| == 2015-09-21 19:03:31,060 main.ConfigureMake INFO Running method handle_iterate_opts part of step ready | |
| == 2015-09-21 19:03:31,061 main.ConfigureMake INFO unpacking... | |
| == 2015-09-21 19:03:31,061 main.ConfigureMake INFO Starting source step | |
| == 2015-09-21 19:03:31,064 main.ConfigureMake INFO Running method checksum_step part of step source | |
| == 2015-09-21 19:03:31,064 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz using None passed. | |
| == 2015-09-21 19:03:31,064 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz using None passed. | |
| == 2015-09-21 19:03:31,064 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz using None passed. | |
| == 2015-09-21 19:03:31,065 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz using None passed. | |
| == 2015-09-21 19:03:31,065 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/lapack-3.5.0.tgz using None passed. | |
| == 2015-09-21 19:03:31,065 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/large.tgz using None passed. | |
| == 2015-09-21 19:03:31,065 main.ConfigureMake INFO Checksum verification for /usr/local/software/juropa3/sources/o/OpenBLAS/timing.tgz using None passed. | |
| == 2015-09-21 19:03:31,065 main.ConfigureMake INFO Running method extract_step part of step source | |
| == 2015-09-21 19:03:31,066 main.ConfigureMake INFO Unpacking source v0.2.13.tar.gz | |
| == 2015-09-21 19:03:31,167 main ERROR cmd "tar xzf /usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz" exited with exitcode 2 and output: | |
| gzip: stdin: unexpected end of file | |
| tar: Unexpected EOF in archive | |
| tar: Unexpected EOF in archive | |
| tar: Error is not recoverable: exiting now | |
| (at easybuild/tools/run.py:360 in parse_cmd_output) | |
| == 2015-09-21 19:03:31,189 main.easyblock WARNING build failed (first 300 chars): cmd "tar xzf /usr/local/software/juropa3/sources/o/OpenBLAS/v0.2.13.tar.gz" exited with exitcode 2 and output: | |
| gzip: stdin: unexpected end of file | |
| tar: Unexpected EOF in archive | |
| tar: Unexpected EOF in archive | |
| tar: Error is not recoverable: exiting now | |
| == 2015-09-21 19:03:31,189 main.ConfigureMake INFO Closing log for application name OpenBLAS version 0.2.13 |
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