Brainvoyager scripting example for creating fmr files.

bv_fmr_creation.js

// Batch script for cretaing FMR files from renamed dicom files (.dcm).
//
// You need to create the subfolders in the main data path beforehand.
//     For instance: /path/to/your/subject/RUN_1
//                   /path/to/your/subject/RUN_2
//                   ...
//
// For more information, check the scripting guide:
// http://support.brainvoyager.com/automation-aamp-development/46-writing-scripts/133-scripting-reference-guide.html

var bvqx = BrainVoyagerQX;
bvqx.PrintToLog("---");

//----------------------------------------------------------------
// Enter the following values:
var MainDataPath = "/path/to/your/subject/";
var RunPrefix = "RUN_";

// Enter the first dicom file paths per run.
var InDicomList = ["/path/to/your/dicoms/data-0001-0001-00001.dcm",
                   "/path/to/your/dicoms/data-0002-0001-00001.dcm",
                   "/path/to/your/dicoms/data-0003-0001-00001.dcm",
                   "/path/to/your/dicoms/data-0004-0001-00001.dcm"];

// Enter the run names.
var RunNameList = ["S01_RUN_01",
                   "S01_RUN_02",
                   "S01_RUN_03",
                   "S01_RUN_04"];

var NrVolPerRunList = [150, 150, 150, 150];

//----------------------------------------------------------------

var NrOfRuns = InDicomList.length;

for(count = 1; count <= NrOfRuns; count++){

    var RunPath = MainDataPath + RunPrefix + String(count) + "/";
    var RunName = RunNameList[count-1];
    var InDicomPath = InDicomList[count-1];

    // Create FMR Project
    var docFMR = bvqx.CreateProjectMosaicFMR("DICOM", InDicomPath,
                                             NrVolPerRunList[count-1],  //nr of volumes
                                             0,          //nr of volumes to skip
                                             false,      //create AMR
                                             46,         //nr of slices
                                             RunName,    //STC prefix
                                             false,      //swap bytes
                                             1316, 1316, //dimension of images in volume x, y
                                             2,          //nr of bytes per pixel, usually 2
                                             RunPath,    //saving directory
                                             1,          //number of volumes per file
                                             188, 188    //dimension of image x, y
                                             );

    // Give prefixed names
    docFMR.SaveAs(RunName);

    bvqx.PrintToLog(RunName + " is done.");
};

bvqx.PrintToLog("Finished.");