Skip to content

Instantly share code, notes, and snippets.

@oganm
Created October 12, 2017 09:25
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save oganm/e59129fdc72493a8a6f5701ed730e58d to your computer and use it in GitHub Desktop.
Save oganm/e59129fdc72493a8a6f5701ed730e58d to your computer and use it in GitHub Desktop.
1901
{
"data": [
{
"name": "050512MJA_U133_2.0_IB29.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB29",
"description": "",
"bioAssays": [
72898
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732627
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732630
},
{
"value": "Disease duration: 9 years; Cause of death: dehydration and respiratory insufficiency",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732631
},
{
"value": "96-119",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732635
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732636
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732629
},
{
"value": "72",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732634
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732633
},
{
"value": "post mortem delay 5:48",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732628
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732632
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65393
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72898
},
{
"name": "050705MJA_U133_2.0_IB04.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB34",
"description": "",
"bioAssays": [
72903
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732695
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732691
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732698
},
{
"value": "Disease duration: 7 years; Cause of death: unknown",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732692
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732696
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732699
},
{
"value": "post mortem delay 3:35",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732693
},
{
"value": "00-099",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732694
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732697
},
{
"value": "78",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732690
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732700
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65398
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72903
},
{
"name": "050705MJA_U133_2.0_IB11.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB41",
"description": "",
"bioAssays": [
72910
],
"factorIdToFactorValueId": {
"factor3800": "fv34752",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34752": "Category = disease staging Value = Braak stage: I categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = reference subject role categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/OBI_0000220"
},
"characteristics": [
{
"value": "01-021",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732783
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732781
},
{
"value": "APOE haplotype:33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732791
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732782
},
{
"value": "post mortem delay 7:40",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732787
},
{
"value": "Braak stage 1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732784
},
{
"value": "82",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732789
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732788
},
{
"value": "normal",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732785
},
{
"value": "Cause of death: heart attack",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732790
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732786
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Braak stage: I",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: I, reference subject role",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740433,
"id": 34752
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65405
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72910
},
{
"name": "050705MJA_U133_2.0_IB09.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB39",
"description": "",
"bioAssays": [
72908
],
"factorIdToFactorValueId": {
"factor3800": "fv34752",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34752": "Category = disease staging Value = Braak stage: I categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = reference subject role categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/OBI_0000220"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732759
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732756
},
{
"value": "Braak stage 1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732760
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732758
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732765
},
{
"value": "Cause of death: myocardial infarction",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732757
},
{
"value": "post mortem delay 4:50",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732761
},
{
"value": "normal",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732762
},
{
"value": "01-028",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732764
},
{
"value": "78",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732755
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732763
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Braak stage: I",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: I, reference subject role",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740433,
"id": 34752
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65403
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72908
},
{
"name": "051223MJA_U133_2.0_IB59.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB59",
"description": "",
"bioAssays": [
72912
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732806
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732812
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732809
},
{
"value": "82",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732815
},
{
"value": "89-073",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732813
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732814
},
{
"value": "Disease duration: 13 years; Cause of death: cachexia and dehydration",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732808
},
{
"value": "post mortem delay 3:25",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732807
},
{
"value": "APOE haplotype:43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732811
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732810
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732816
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65407
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72912
},
{
"name": "050705MJA_U133_2.0_IB06.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB36",
"description": "",
"bioAssays": [
72905
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732716
},
{
"value": "post mortem delay 4:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732720
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732718
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732723
},
{
"value": "00-066",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732721
},
{
"value": "APOE haplotype:43; MAPT haplotype: H2\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732717
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732724
},
{
"value": "80",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732726
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732722
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732725
},
{
"value": "Disease duration: 7 years; Cause of death: dehydration and vascular insufficiency",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732719
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65400
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72905
},
{
"name": "050512MJA_U133_2.0_IB30.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB30",
"description": "",
"bioAssays": [
72899
],
"factorIdToFactorValueId": {
"factor3800": "fv34675",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34675": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697::::Category = disease staging Value = Braak stage: II categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732639
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732643
},
{
"value": "Disease duration: 3 years; Cause of death: cachexia and dehydration",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732642
},
{
"value": "93",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732646
},
{
"value": "Braak stage 2",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732649
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732640
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732648
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732645
},
{
"value": "99-050",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732641
},
{
"value": "post mortem delay 4:15",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732647
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732644
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy, Braak stage: II",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738892,
"id": 34675
}
],
"assayName": null,
"assayDescription": null,
"id": 65394
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72899
},
{
"name": "050705MJA_U133_2.0_IB02.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB32",
"description": "",
"bioAssays": [
72901
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "00-044",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732668
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732667
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732664
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732671
},
{
"value": "APOE haplotype: 44; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732670
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732672
},
{
"value": "80",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732674
},
{
"value": "post mortem delay 5:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732666
},
{
"value": "Disease duration: more than 7 years; Cause of death: general deterioration",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732665
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732669
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732673
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65396
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72901
},
{
"name": "051223MJA_U133_2.0_IB62.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB62",
"description": "",
"bioAssays": [
72914
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732832
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732835
},
{
"value": "APOE haplotype: 44; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732840
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732841
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732842
},
{
"value": "Disease duration: 8 years; Cause of death: lungdisorder with fever for 4 weeks",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732834
},
{
"value": "61",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732836
},
{
"value": "post mortem delay 6:15",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732838
},
{
"value": "98-163",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732839
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732837
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732833
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65409
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72914
},
{
"name": "050511MJA_U133_2.0_IB18.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB18",
"description": "",
"bioAssays": [
72887
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732486
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732487
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732496
},
{
"value": "03-049",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732488
},
{
"value": "Disease duration: 3 years; Cause of death: respiratory insufficience",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732492
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732494
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732495
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732491
},
{
"value": "post mortem delay 5:10",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732493
},
{
"value": "64",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732489
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732490
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65382
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72887
},
{
"name": "050511MJA_U133_2.0_IB26.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB26",
"description": "",
"bioAssays": [
72895
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732593
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732590
},
{
"value": "Disease duration: 6 years; Cause of death: bleeding of the stomach",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732598
},
{
"value": "96-012",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732594
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732599
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732595
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732600
},
{
"value": "post mortem delay 7:55",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732592
},
{
"value": "64",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732596
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732597
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732591
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65390
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72895
},
{
"name": "050511MJA_U133_2.0_IB20.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB20",
"description": "",
"bioAssays": [
72889
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732512
},
{
"value": "Disease duration: 14 years; Cause of death: infection of lungs",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732519
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732516
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732521
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732513
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732522
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732518
},
{
"value": "post mortem delay 5:10",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732520
},
{
"value": "98-029",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732514
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732517
},
{
"value": "74",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732515
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65384
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72889
},
{
"name": "050511MJA_U133_2.0_IB22.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB22",
"description": "",
"bioAssays": [
72891
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732538
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732543
},
{
"value": "98-075",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732542
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732547
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732544
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732548
},
{
"value": "post mortem delay 5:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732541
},
{
"value": "77",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732546
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732545
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732539
},
{
"value": "Disease duration: 4 years; Cause of death: complications secondary to a cerebro vasculair accident",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732540
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65386
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72891
},
{
"name": "050511MJA_U133_2.0_IB24.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB24",
"description": "",
"bioAssays": [
72893
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732564
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732568
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732571
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732572
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732565
},
{
"value": "Disease duration: 6 years; Cause of death: myocardial infarction",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732567
},
{
"value": "95-086",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732574
},
{
"value": "64",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732569
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732570
},
{
"value": "post mortem delay 4:40",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732573
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732566
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65388
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72893
},
{
"name": "051223MJA_U133_2.0_IB55.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB55",
"description": "",
"bioAssays": [
72911
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "57",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732797
},
{
"value": "Disease duration: 4 years; Cause of death: septic with a urinary infection",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732801
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732798
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732794
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732795
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732803
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732800
},
{
"value": "95-099",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732802
},
{
"value": "post mortem delay 8:10",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732796
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732799
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65406
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72911
},
{
"name": "050512MJA_U133_2.0_IB28.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB28",
"description": "",
"bioAssays": [
72897
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "57",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732618
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732615
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732619
},
{
"value": "Disease duration: 6 years; Cause of death: pneumonia and cachexia by PSP",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732617
},
{
"value": "post mortem delay 5:43",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732624
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732623
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732616
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732622
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732620
},
{
"value": "97-072",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732621
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65392
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72897
},
{
"name": "050511MJA_U133_2.0_IB21.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB21",
"description": "",
"bioAssays": [
72890
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732525
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732527
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732528
},
{
"value": "98-119",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732535
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732533
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732534
},
{
"value": "Disease duration: 11 years; Cause of death: pneumonia in a dehydrated and cachexic patient",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732532
},
{
"value": "post mortem delay 3:45",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732529
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732531
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732530
},
{
"value": "74",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732526
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65385
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72890
},
{
"name": "050705MJA_U133_2.0_IB05.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB35",
"description": "",
"bioAssays": [
72904
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732704
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732703
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732713
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732710
},
{
"value": "Disease duration: 15 years; Cause of death: dehydration",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732705
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732711
},
{
"value": "72",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732708
},
{
"value": "post mortem delay 3:45",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732706
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732707
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732712
},
{
"value": "00-140",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732709
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65399
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72904
},
{
"name": "050705MJA_U133_2.0_IB07.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB37",
"description": "",
"bioAssays": [
72906
],
"factorIdToFactorValueId": {
"factor3800": "fv34752",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34752": "Category = disease staging Value = Braak stage: I categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = reference subject role categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/OBI_0000220"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732729
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732733
},
{
"value": "Braak stage 1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732735
},
{
"value": "82",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732739
},
{
"value": "00-142",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732734
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732738
},
{
"value": "APOE haplotype: 32; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732731
},
{
"value": "Cause of death: myocardial infarction",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732730
},
{
"value": "normal",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732736
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732737
},
{
"value": "post mortem delay 5:30",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732732
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Braak stage: I",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: I, reference subject role",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740433,
"id": 34752
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65401
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72906
},
{
"name": "051223MJA_U133_2.0_IB64.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB64",
"description": "",
"bioAssays": [
72916
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732867
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732858
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732862
},
{
"value": "00-096",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732859
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732865
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732864
},
{
"value": "73",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732866
},
{
"value": "post mortem delay 5:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732860
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732863
},
{
"value": "Disease duration: 3 years; Cause of death: pneumonia \/ cachexia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732861
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65411
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72916
},
{
"name": "050705MJA_U133_2.0_IB03.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB33",
"description": "",
"bioAssays": [
72902
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732677
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732684
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732679
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732685
},
{
"value": "73",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732687
},
{
"value": "APOE haplotype:43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732683
},
{
"value": "post mortem delay 5:00",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732682
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732681
},
{
"value": "01-091",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732678
},
{
"value": "Disease duration: 10 years; Cause of death: cachexia following swallowing disturbances",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732680
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732686
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65397
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72902
},
{
"name": "050705MJA_U133_2.0_IB10.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB40",
"description": "",
"bioAssays": [
72909
],
"factorIdToFactorValueId": {
"factor3800": "fv34677",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34677": "Category = disease staging Value = Braak stage: 0 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = reference subject role categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/OBI_0000220"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732769
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732773
},
{
"value": "post mortem delay 4:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732774
},
{
"value": "Braak stage 0",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732772
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732777
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732771
},
{
"value": "Cause of death: pancreatic cancer",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732770
},
{
"value": "99-116",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732778
},
{
"value": "normal",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732775
},
{
"value": "78",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732768
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732776
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Braak stage: 0",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: 0, reference subject role",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740432,
"id": 34677
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65404
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72909
},
{
"name": "050512MJA_U133_2.0_IB31.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB31",
"description": "",
"bioAssays": [
72900
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732655
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732652
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732661
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732660
},
{
"value": "Disease duration: 7 years; Cause of death: pulmonary arrest",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732659
},
{
"value": "96-098",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732654
},
{
"value": "72",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732658
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732657
},
{
"value": "post mortem delay 5:20",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732653
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732656
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65395
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72900
},
{
"name": "051223MJA_U133_2.0_IB60.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB60",
"description": "",
"bioAssays": [
72913
],
"factorIdToFactorValueId": {
"factor3800": "fv34673",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34673": "Category = disease staging Value = Braak stage: VI categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = Alzheimer's disease categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_10652"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732819
},
{
"value": "68",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732825
},
{
"value": "Braak stage 6",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732826
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732821
},
{
"value": "APOE haplotype: 44; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732824
},
{
"value": "Disease duration: 8 years; Cause of death: aspiration pneumonia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732827
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732828
},
{
"value": "95-069",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732820
},
{
"value": "post mortem delay 4:15",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732823
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732822
},
{
"value": "Alzheimer's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "DOID_10652",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_10652",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732829
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Braak stage: VI",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: VI, Alzheimer's disease",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740428,
"id": 34673
}
],
"assayName": null,
"assayDescription": null,
"id": 65408
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72913
},
{
"name": "050511MJA_U133_2.0_IB17.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB17",
"description": "",
"bioAssays": [
72886
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732474
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732483
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732476
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732480
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732481
},
{
"value": "96-064",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732482
},
{
"value": "Disease duration: 12 years; Cause of death: sepsis, due to an urinary tract infection, and cachexia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732475
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732479
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732477
},
{
"value": "post mortem delay 5:00",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732478
},
{
"value": "78",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732473
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65381
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72886
},
{
"name": "050511MJA_U133_2.0_IB19.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB19",
"description": "",
"bioAssays": [
72888
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732501
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732509
},
{
"value": "post mortem delay 3:55",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732500
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732499
},
{
"value": "96-094",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732502
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732507
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732508
},
{
"value": "72",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732506
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732505
},
{
"value": "Disease duration: 8 years; Cause of death: cachexia and dehydration",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732503
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732504
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
}
],
"assayName": null,
"assayDescription": null,
"id": 65383
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72888
},
{
"name": "050705MJA_U133_2.0_IB08.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB38",
"description": "",
"bioAssays": [
72907
],
"factorIdToFactorValueId": {
"factor3800": "fv34677",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34677": "Category = disease staging Value = Braak stage: 0 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null::::Category = disease Value = reference subject role categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/OBI_0000220"
},
"characteristics": [
{
"value": "post mortem delay 6:45",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732750
},
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732752
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732742
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732745
},
{
"value": "Braak stage 0",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732743
},
{
"value": "98-101",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732744
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732751
},
{
"value": "72",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732749
},
{
"value": "Cause of death: heart failure",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732747
},
{
"value": "normal",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732746
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732748
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Braak stage: 0",
"description": null,
"category": "disease staging",
"valueUri": null,
"factorValue": "Braak stage: 0, reference subject role",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"factorId": 3800,
"measurement": false,
"charId": 3740432,
"id": 34677
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65402
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72907
},
{
"name": "050511MJA_U133_2.0_IB23.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB23",
"description": "",
"bioAssays": [
72892
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34660"
},
"factorValues": {
"fv34660": "Category = sex Value = female categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "APOE haplotype: 43; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732561
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732551
},
{
"value": "female",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001265",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001265",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732553
},
{
"value": "98-159",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732560
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732557
},
{
"value": "83",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732554
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732558
},
{
"value": "Disease duration: 16 years; Cause of death: acute cardiac arrest",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732559
},
{
"value": "post mortem delay 5:10",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732556
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732555
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732552
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "female",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000383",
"factorValue": "female",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738849,
"id": 34660
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65387
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72892
},
{
"name": "051223MJA_U133_2.0_IB63.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB63",
"description": "",
"bioAssays": [
72915
],
"factorIdToFactorValueId": {
"factor3800": "fv34750",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34750": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type C1 categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732845
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732847
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732854
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732850
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732855
},
{
"value": "Disease duration: 12 years; Cause of death: bronchopneumonia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732848
},
{
"value": "Constantinides type C1",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732853
},
{
"value": "97-051",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732849
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732852
},
{
"value": "post mortem delay 5:30",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732846
},
{
"value": "75",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732851
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type C1",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740425,
"id": 34750
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65410
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72915
},
{
"name": "050511MJA_U133_2.0_IB27.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB27",
"description": "",
"bioAssays": [
72896
],
"factorIdToFactorValueId": {
"factor3800": "fv34751",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34751": "Category = disease Value = Progressive Supranuclear Palsy categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697"
},
"characteristics": [
{
"value": "post mortem delay 8:55",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732603
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732604
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732606
},
{
"value": "APOE haplotype: 42; MAPT haplotype: H1\/H1",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732610
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732611
},
{
"value": "Progressive supranuclear palsy",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732609
},
{
"value": "73",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732612
},
{
"value": "Disease duration: 2 years; Cause of death: euthanasia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732605
},
{
"value": "00-086",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732608
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732607
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "Progressive Supranuclear Palsy",
"description": null,
"category": "disease",
"valueUri": "http:\/\/ontology.neuinfo.org\/NIF\/Dysfunction\/NIF-Dysfunction.owl#birnlex_12697",
"factorValue": "Progressive Supranuclear Palsy",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3740429,
"id": 34751
},
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
}
],
"assayName": null,
"assayDescription": null,
"id": 65391
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72896
},
{
"name": "050511MJA_U133_2.0_IB25.CEL",
"description": "",
"sequencePairedReads": null,
"sequenceReadCount": null,
"sequenceReadLength": null,
"outlier": false,
"metadata": null,
"accession": null,
"arrayDesign": {
"name": "Affymetrix GeneChip Human Genome U133 Plus 2.0 Array",
"description": null,
"shortName": "GPL570",
"color": null,
"expressionExperimentCount": null,
"hasBlatAssociations": null,
"hasGeneAssociations": null,
"isMerged": null,
"hasSequenceAssociations": null,
"isMergee": null,
"isSubsumed": null,
"isSubsumer": null,
"lastRepeatMask": null,
"taxon": null,
"technologyType": null,
"lastGeneMapping": null,
"lastSequenceAnalysis": null,
"lastSequenceUpdate": null,
"dateCached": null,
"numProbeSequences": null,
"numProbeAlignments": null,
"numProbesToGenes": null,
"numGenes": null,
"designElementCount": null,
"troubleDetails": "No trouble details provided.",
"troubled": false,
"lastUpdated": null,
"lastTroubledEvent": null,
"lastNeedsAttentionEvent": null,
"needsAttention": false,
"lastNoteUpdateEvent": null,
"curationNote": null,
"id": 4
},
"processingDate": null,
"sample": {
"name": "L_IB25",
"description": "",
"bioAssays": [
72894
],
"factorIdToFactorValueId": {
"factor3800": "fv34674",
"factor3798": "fv34659"
},
"factorValues": {
"fv34659": "Category = sex Value = male categoryUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000047 valueUri=http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"fv34674": "Category = disease Value = Pick's disease of the brain categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408 valueUri=http:\/\/purl.obolibrary.org\/obo\/DOID_11870::::Category = disease staging Value = Constantinides type A categoryUri=http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410 valueUri=null"
},
"characteristics": [
{
"value": "post mortem delay 5:15",
"category": "ClinicalInformation",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": null,
"root": false,
"numTimesUsed": 0,
"id": 3732584
},
{
"value": "medial temporal lobe",
"category": "organism part",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000635",
"root": false,
"numTimesUsed": 0,
"id": 3732577
},
{
"value": "male",
"category": "sex",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001266",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001266",
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"root": false,
"numTimesUsed": 0,
"id": 3732581
},
{
"value": "Pick's disease",
"category": "disease",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"root": false,
"numTimesUsed": 0,
"id": 3732585
},
{
"value": "APOE haplotype: 33; MAPT haplotype: H1\/H2",
"category": "haplotype",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/SO_0001024",
"root": false,
"numTimesUsed": 0,
"id": 3732582
},
{
"value": "adult",
"category": "developmental stage",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "EFO_0001272",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001272",
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000399",
"root": false,
"numTimesUsed": 0,
"id": 3732586
},
{
"value": "Disease duration: 15 years; Cause of death: aspiration pneumonia",
"category": "clinical history",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000352",
"root": false,
"numTimesUsed": 0,
"id": 3732579
},
{
"value": "70",
"category": "measurement",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0001444",
"root": false,
"numTimesUsed": 0,
"id": 3732580
},
{
"value": "frozen specimen",
"category": "BioSourceType",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "OBI_0000922",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/OBI_0000922",
"categoryUri": "http:\/\/mged.sourceforge.net\/ontologies\/MGEDOntology.owl#BioSourceType",
"root": false,
"numTimesUsed": 0,
"id": 3732583
},
{
"value": "Constantinides type A",
"category": "disease staging",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000410",
"root": false,
"numTimesUsed": 0,
"id": 3732578
},
{
"value": "02-062",
"category": "individual",
"ontologyUsed": null,
"privateGeneCount": 0,
"publicGeneCount": 0,
"urlId": "",
"alreadyPresentInDatabase": false,
"alreadyPresentOnGene": false,
"child": false,
"taxon": "",
"valueUri": null,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000542",
"root": false,
"numTimesUsed": 0,
"id": 3732587
}
],
"factors": {
"factor3800": "DiseaseState",
"factor3798": "Sex"
},
"factorValueObjects": [
{
"value": "male",
"description": null,
"category": "sex",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000384",
"factorValue": "male",
"isBaseline": false,
"categoryUri": "http:\/\/purl.obolibrary.org\/obo\/PATO_0000047",
"factorId": 3798,
"measurement": false,
"charId": 3738848,
"id": 34659
},
{
"value": "Pick's disease of the brain",
"description": null,
"category": "disease",
"valueUri": "http:\/\/purl.obolibrary.org\/obo\/DOID_11870",
"factorValue": "Pick's disease of the brain, Constantinides type A",
"isBaseline": false,
"categoryUri": "http:\/\/www.ebi.ac.uk\/efo\/EFO_0000408",
"factorId": 3800,
"measurement": false,
"charId": 3738891,
"id": 34674
}
],
"assayName": null,
"assayDescription": null,
"id": 65389
},
"predictedOutlier": false,
"userFlaggedOutlier": false,
"id": 72894
}
]
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment