Created
May 4, 2009 09:37
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Call hivpred with plugin installed
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/******************************************************************************* | |
* Script to predict the susceptibility of an HIV protease sequence for seven | |
* drugs based on the proteochemometric model described in: | |
* Lapins M, Eklund M, Spjuth O, Prusis P, Wikberg JE. | |
* Proteochemometric modeling of HIV protease susceptibility, | |
* BMC Bioinformatics. 2008 Apr 10;9:181. . | |
* | |
* Script accepts a 99 aa sequence as input and delivers susceptbiliy values | |
* for the drugs Amprenavir, Atazanavir, Indinavir, Lopinavir, Nelfinavir, | |
* Ritonavir, and Saquinavir. | |
* | |
* Requires the feature 'se.uu.farmbio.hivpred_feature' to be installed | |
* | |
* Script author: Ola Spjuth <ola.spjuth@farmbio.uu.se> | |
* | |
******************************************************************************/ | |
var seq="PQITLWQRPIVTIKIGGQLREALLDTGADNTVLEEMNLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRDLLTQIGCTLNF"; | |
hivpred.predict(seq) |
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