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olavurmortensen/jupyter_troubleshoot.log

Created December 13, 2019 09:34
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jupyter_troubleshoot.log
$PATH:
/home/olavur/miniconda3/envs/pypopgen/bin
/home/olavur/bin
/home/olavur/.local/bin
/home/olavur/Documents/goworkdir/bin
/usr/local/go/bin
/usr/local/GenomeBrowse
/home/olavur/bin
/home/olavur/.local/bin
/home/olavur/Documents/goworkdir/bin
/usr/local/go/bin
/usr/local/GenomeBrowse
/home/olavur/miniconda3/envs/pypopgen/bin
/home/olavur/miniconda3/bin
/home/olavur/bin
/home/olavur/.local/bin
/home/olavur/Documents/goworkdir/bin
/usr/local/go/bin
/usr/local/GenomeBrowse
/home/olavur/miniconda3/envs/pypopgen/bin
/home/olavur/miniconda3/condabin
/home/olavur/Documents/goworkdir/bin
/usr/local/go/bin
/usr/local/GenomeBrowse
/home/olavur/bin
/home/olavur/.local/bin
/usr/local/sbin
/usr/local/bin
/usr/sbin
/usr/bin
/sbin
/bin
/usr/games
/usr/local/games
/snap/bin
/opt/rancher-v2.2.0
/opt/rancher-v2.2.0
/opt/rancher-v2.2.0
/opt/rancher-v2.2.0
sys.path:
/home/olavur/miniconda3/envs/pypopgen/bin
/home/olavur/miniconda3/envs/pypopgen/lib/python38.zip
/home/olavur/miniconda3/envs/pypopgen/lib/python3.8
/home/olavur/miniconda3/envs/pypopgen/lib/python3.8/lib-dynload
/home/olavur/miniconda3/envs/pypopgen/lib/python3.8/site-packages
sys.executable:
/home/olavur/miniconda3/envs/pypopgen/bin/python
sys.version:
3.8.0 | packaged by conda-forge | (default, Nov 22 2019, 19:11:38)
[GCC 7.3.0]
platform.platform():
Linux-4.15.0-72-generic-x86_64-with-glibc2.10
which -a jupyter:
/home/olavur/miniconda3/envs/pypopgen/bin/jupyter
/home/olavur/miniconda3/envs/pypopgen/bin/jupyter
/home/olavur/miniconda3/bin/jupyter
/home/olavur/miniconda3/envs/pypopgen/bin/jupyter
pip list:
Package Version
------------------ -------------------
attrs 19.3.0
backcall 0.1.0
bleach 3.1.0
certifi 2019.11.28
decorator 4.4.1
defusedxml 0.6.0
entrypoints 0.3
importlib-metadata 1.3.0
ipykernel 5.1.3
ipython 7.10.1
ipython-genutils 0.2.0
jedi 0.15.1
Jinja2 2.10.3
json5 0.8.5
jsonschema 3.2.0
jupyter-client 5.3.3
jupyter-core 4.6.1
jupyterlab 1.2.0
jupyterlab-server 1.0.6
MarkupSafe 1.1.1
mistune 0.8.4
more-itertools 8.0.2
nbconvert 5.6.1
nbformat 4.4.0
notebook 6.0.1
pandocfilters 1.4.2
parso 0.5.1
pexpect 4.7.0
pickleshare 0.7.5
pip 19.3.1
prometheus-client 0.7.1
prompt-toolkit 3.0.2
ptyprocess 0.6.0
Pygments 2.5.2
pyrsistent 0.15.6
python-dateutil 2.8.1
pyzmq 18.1.1
Send2Trash 1.5.0
setuptools 42.0.2.post20191201
six 1.13.0
terminado 0.8.3
testpath 0.4.4
tornado 6.0.3
traitlets 4.3.3
wcwidth 0.1.7
webencodings 0.5.1
wheel 0.33.6
zipp 0.6.0
conda list:
# packages in environment at /home/olavur/miniconda3/envs/pypopgen:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main conda-forge
attrs 19.3.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
certifi 2019.11.28 py38_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
entrypoints 0.3 py38_1000 conda-forge
icu 64.2 he1b5a44_1 conda-forge
importlib_metadata 1.3.0 py38_0 conda-forge
ipykernel 5.1.3 py38h5ca1d4c_0 conda-forge
ipython 7.10.1 py38h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.15.1 py38_0 conda-forge
jinja2 2.10.3 py_0 conda-forge
json5 0.8.5 py_0 conda-forge
jsonschema 3.2.0 py38_0 conda-forge
jupyter_client 5.3.3 py38_1 conda-forge
jupyter_core 4.6.1 py38_0 conda-forge
jupyterlab 1.2.0 py_0 conda-forge
jupyterlab-vim v0.8.0 0 krinsman
jupyterlab_server 1.0.6 py_0 conda-forge
ld_impl_linux-64 2.33.1 h53a641e_7 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.2.0 hdf63c60_0 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_0 conda-forge
libuv 1.33.1 h516909a_0 conda-forge
markupsafe 1.1.1 py38h516909a_0 conda-forge
mistune 0.8.4 py38h516909a_1000 conda-forge
more-itertools 8.0.2 py_0 conda-forge
nbconvert 5.6.1 py38_0 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
nodejs 13.0.0 h10a4023_1 conda-forge
notebook 6.0.1 py38_0 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
pandoc 2.9 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.5.1 py_0 conda-forge
pexpect 4.7.0 py38_0 conda-forge
pickleshare 0.7.5 py38_1000 conda-forge
pip 19.3.1 py38_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 3.0.2 py_0 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
pygments 2.5.2 py_0 conda-forge
pyrsistent 0.15.6 py38h516909a_0 conda-forge
python 3.8.0 h357f687_5 conda-forge
python-dateutil 2.8.1 py_0 conda-forge
pyzmq 18.1.1 py38h1768529_0 conda-forge
readline 8.0 hf8c457e_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 42.0.2 py38_0 conda-forge
six 1.13.0 py38_0 conda-forge
sqlite 3.30.1 hcee41ef_0 conda-forge
terminado 0.8.3 py38_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.10 hed695b0_0 conda-forge
tornado 6.0.3 py38h516909a_0 conda-forge
traitlets 4.3.3 py38_0 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py38_0 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zipp 0.6.0 py_0 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
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