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nextflow.log
Nov-28 13:04:44.499 [main] DEBUG nextflow.cli.Launcher - $> ./nextflow run exoseq/PairedSingleSampleWF.nf -with-docker nfcore/exoseq:gatkfix --reads /mnt/fargen/150123_NS500347_0004_AH2CKVAFXX/Data/Intensities/BaseCalls/318616*_L00*_R{1,2}_*.fastq.gz -c custom_docker.config
Nov-28 13:04:44.773 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 18.10.1
Nov-28 13:04:44.810 [main] INFO nextflow.cli.CmdRun - Launching `exoseq/PairedSingleSampleWF.nf` [adoring_murdock] - revision: b8629886d3
Nov-28 13:04:44.838 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/exoseq/nextflow.config
Nov-28 13:04:44.845 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/custom_docker.config
Nov-28 13:04:44.846 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/exoseq/nextflow.config
Nov-28 13:04:44.846 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/custom_docker.config
Nov-28 13:04:44.904 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
Nov-28 13:04:45.893 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
Nov-28 13:04:45.992 [main] DEBUG nextflow.config.ConfigBuilder - Enabling execution in Docker container as requested by cli option `-with-docker nfcore/exoseq:gatkfix`
Nov-28 13:04:46.047 [main] DEBUG nextflow.Session - Session uuid: faf7a1a4-387a-4292-9946-863a7de67afe
Nov-28 13:04:46.047 [main] DEBUG nextflow.Session - Run name: adoring_murdock
Nov-28 13:04:46.049 [main] DEBUG nextflow.Session - Executor pool size: 24
Nov-28 13:04:46.076 [main] DEBUG nextflow.cli.CmdRun -
Version: 18.10.1 build 5003
Modified: 24-10-2018 14:03 UTC (15:03 WEST)
System: Linux 4.4.0-101-generic
Runtime: Groovy 2.5.3 on OpenJDK 64-Bit Server VM 1.8.0_151-8u151-b12-0ubuntu0.16.04.2-b12
Encoding: UTF-8 (UTF-8)
Process: 33833@hnpv-fargenCompute01.heilsunet.fo [10.64.13.53]
CPUs: 24 - Mem: 251.9 GB (243.9 GB) - Swap: 16 GB (16 GB)
Nov-28 13:04:46.163 [main] DEBUG nextflow.Session - Work-dir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work [cifs]
Nov-28 13:04:46.601 [main] DEBUG nextflow.Session - Session start invoked
Nov-28 13:04:46.609 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start
Nov-28 13:04:46.610 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/results/pipeline_info/pipeline_info/nfcore-exoseq_trace.txt
Nov-28 13:04:46.691 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing
Nov-28 13:04:47.546 [main] WARN nextflow.Session - The config file defines settings for an unknown process: sortSam
Nov-28 13:04:47.546 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Nov-28 13:04:47.615 [PathVisitor-1] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: /mnt/fargen/150123_NS500347_0004_AH2CKVAFXX/Data/Intensities/BaseCalls/; pattern: 318616*_L00*_R{1,2}_*.fastq.gz; options: [:]
Nov-28 13:04:47.779 [main] INFO nextflow.Nextflow - Run Name : adoring_murdock
Reads : /mnt/fargen/150123_NS500347_0004_AH2CKVAFXX/Data/Intensities/BaseCalls/318616*_L00*_R{1,2}_*.fastq.gz
Data Type : Paired-End
Genome Assembly: GRCH38
Trim R1 : 5
Trim R2 : 5
Trim 3' R1 : 0
Trim 3' R2 : 0
Aligner : BWA Mem
BWA Index : /mnt/fargen/resources/grch38_reference/refdata-GRCh38-2.1.0/fasta/genome.fa.fai
Save Intermediate Aligned Files: No
Save Intermediate Variant Files: No
Max Memory : 20 GB
Max CPUs : 10
Max Time : 2d
Output dir : ./results
Working dir : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work
Container : nfcore/exoseq:gatkfix
Current home : /home/olavur
Current user : root
Current path : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015
Script dir : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/exoseq
Config Profile : standard
Nov-28 13:04:47.780 [main] INFO nextflow.Nextflow - =========================================
Nov-28 13:04:47.893 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:fastqc` matches process fastqc
Nov-28 13:04:47.896 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:47.896 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:47.903 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:47.905 [main] INFO nextflow.executor.Executor - [warm up] executor > local
Nov-28 13:04:47.909 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=24; memory=251.9 GB; capacity=24; pollInterval=100ms; dumpInterval=5m
Nov-28 13:04:47.913 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: LocalPollingMonitor
Nov-28 13:04:47.914 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
Nov-28 13:04:47.917 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: local
Nov-28 13:04:47.971 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc)
Nov-28 13:04:47.975 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc -- maxForks: 24
Nov-28 13:04:48.027 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:trim_galore` matches process trim_galore
Nov-28 13:04:48.031 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.031 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.032 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.033 [main] DEBUG nextflow.Session - >>> barrier register (process: trim_galore)
Nov-28 13:04:48.034 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > trim_galore -- maxForks: 24
Nov-28 13:04:48.072 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwamem` matches process bwamem
Nov-28 13:04:48.077 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.079 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.081 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.084 [main] DEBUG nextflow.Session - >>> barrier register (process: bwamem)
Nov-28 13:04:48.085 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwamem -- maxForks: 24
Nov-28 13:04:48.114 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:markDuplicates` matches process markDuplicates
Nov-28 13:04:48.117 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.118 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.118 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.120 [main] DEBUG nextflow.Session - >>> barrier register (process: markDuplicates)
Nov-28 13:04:48.120 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > markDuplicates -- maxForks: 24
Nov-28 13:04:48.160 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:recal_bam_files` matches process recal_bam_files
Nov-28 13:04:48.162 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.162 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.163 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.163 [main] DEBUG nextflow.Session - >>> barrier register (process: recal_bam_files)
Nov-28 13:04:48.164 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > recal_bam_files -- maxForks: 24
Nov-28 13:04:48.177 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:applyBQSR` matches process applyBQSR
Nov-28 13:04:48.181 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.181 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.182 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.183 [main] DEBUG nextflow.Session - >>> barrier register (process: applyBQSR)
Nov-28 13:04:48.185 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > applyBQSR -- maxForks: 24
Nov-28 13:04:48.206 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:qualiMap` matches process qualiMap
Nov-28 13:04:48.208 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.208 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.208 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.210 [main] DEBUG nextflow.Session - >>> barrier register (process: qualiMap)
Nov-28 13:04:48.211 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > qualiMap -- maxForks: 24
Nov-28 13:04:48.237 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:variantCall` matches process variantCall
Nov-28 13:04:48.238 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.238 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.239 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.241 [main] DEBUG nextflow.Session - >>> barrier register (process: variantCall)
Nov-28 13:04:48.241 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > variantCall -- maxForks: 24
Nov-28 13:04:48.256 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.256 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.256 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.257 [main] DEBUG nextflow.Session - >>> barrier register (process: get_software_versions)
Nov-28 13:04:48.258 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > get_software_versions -- maxForks: 24
Nov-28 13:04:48.268 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.270 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.271 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.272 [main] DEBUG nextflow.Session - >>> barrier register (process: GenerateMultiQCconfig)
Nov-28 13:04:48.272 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > GenerateMultiQCconfig -- maxForks: 24
Nov-28 13:04:48.340 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Nov-28 13:04:48.340 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Nov-28 13:04:48.340 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Nov-28 13:04:48.342 [main] DEBUG nextflow.Session - >>> barrier register (process: multiqc)
Nov-28 13:04:48.342 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > multiqc -- maxForks: 24
Nov-28 13:04:48.352 [main] DEBUG nextflow.script.ScriptRunner - > Await termination
Nov-28 13:04:48.352 [main] DEBUG nextflow.Session - Session await
Nov-28 13:04:48.456 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.466 [Task submitter] INFO nextflow.Session - [9b/87fde4] Submitted process > trim_galore (318616_S1_L002)
Nov-28 13:04:48.514 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.515 [Task submitter] INFO nextflow.Session - [da/d935a0] Submitted process > fastqc (318616_S1_L001)
Nov-28 13:04:48.544 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.545 [Task submitter] INFO nextflow.Session - [d0/84e16e] Submitted process > fastqc (318616_S1_L002)
Nov-28 13:04:48.568 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.568 [Task submitter] INFO nextflow.Session - [fc/bc30cb] Submitted process > get_software_versions
Nov-28 13:04:48.592 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.592 [Task submitter] INFO nextflow.Session - [3f/831e1e] Submitted process > fastqc (318616_S1_L004)
Nov-28 13:04:48.617 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.618 [Task submitter] INFO nextflow.Session - [0f/434757] Submitted process > fastqc (318616_S1_L003)
Nov-28 13:04:48.642 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.643 [Task submitter] INFO nextflow.Session - [1f/ad61c3] Submitted process > trim_galore (318616_S1_L001)
Nov-28 13:04:48.672 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.673 [Task submitter] INFO nextflow.Session - [24/6d112b] Submitted process > trim_galore (318616_S1_L004)
Nov-28 13:04:48.701 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.702 [Task submitter] INFO nextflow.Session - [ce/1f6f8c] Submitted process > trim_galore (318616_S1_L003)
Nov-28 13:04:48.727 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Nov-28 13:04:48.728 [Task submitter] INFO nextflow.Session - [bc/126bd9] Submitted process > GenerateMultiQCconfig
Nov-28 13:04:54.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: GenerateMultiQCconfig; status: COMPLETED; exit: 0; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/bc/126bd9f1e67f2d486b089fed3ffc10]
Nov-28 13:04:54.363 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: GenerateMultiQCconfig)
Nov-28 13:05:02.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: get_software_versions; status: COMPLETED; exit: 0; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/fc/bc30cbe66646ea32f4fddd445628ef]
Nov-28 13:05:02.711 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: get_software_versions)
Nov-28 13:09:48.041 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:14:48.075 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:19:48.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:24:48.134 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:29:48.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:34:48.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:39:48.166 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:44:48.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:49:48.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:54:48.317 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 13:59:48.339 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:04:48.359 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:09:48.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:14:48.413 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:19:48.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:24:48.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:29:48.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:34:48.574 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:39:48.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:44:48.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:49:48.808 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:54:48.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 14:59:48.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:04:49.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:09:49.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:14:49.182 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:19:49.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:24:49.300 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:29:49.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:34:49.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:39:49.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:44:49.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:49:49.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:54:49.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 15:59:49.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:04:49.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:09:49.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:14:49.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:19:49.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:24:49.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:29:49.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:34:50.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:39:50.055 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:44:50.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:49:50.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:54:50.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 16:59:50.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:04:50.290 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:09:50.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:14:50.388 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:19:50.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:24:50.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:29:50.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:34:50.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:39:50.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:44:50.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:49:50.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:54:50.796 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 17:59:50.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:04:50.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:09:50.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:14:50.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:19:51.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:24:51.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:29:51.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:34:51.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:39:51.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:44:51.233 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:49:51.273 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:54:51.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 18:59:51.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:04:51.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:09:51.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:14:51.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:19:51.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:24:51.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:29:51.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:34:51.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:39:51.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:44:51.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:49:51.676 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:54:51.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 19:59:51.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:04:51.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:09:51.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:14:51.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:19:51.925 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:24:51.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:29:52.058 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:34:52.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:39:52.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:44:52.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:49:52.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:54:52.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 20:59:52.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:04:52.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:09:52.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:14:52.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:19:52.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:24:52.603 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:29:52.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:34:52.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:39:52.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:44:52.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:49:52.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:54:52.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 21:59:52.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:04:52.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:09:53.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:14:53.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:19:53.130 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:24:53.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:29:53.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:34:53.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:39:53.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:44:53.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:49:53.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:54:53.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 22:59:53.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:04:53.448 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:09:53.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:14:53.523 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:19:53.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:24:53.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:29:53.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:34:53.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:39:53.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:44:53.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:49:53.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:54:53.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-28 23:59:53.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:04:53.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:09:53.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:14:53.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:19:53.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:24:54.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:29:54.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:34:54.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:39:54.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:44:54.215 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:49:54.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:54:54.339 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 00:59:54.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
~> TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
~> TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
~> TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:04:48.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: fastqc (318616_S1_L001); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (12h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09]
Nov-29 01:04:48.616 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'fastqc (318616_S1_L001)'
Caused by:
Process exceeded running time limit (12h)
Command executed:
fastqc -q 318616_S1_L001_R1_001.fastq.gz 318616_S1_L001_R2_001.fastq.gz
Command exit status:
-
Command output:
(empty)
Command error:
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1106)
at sun.font.CompositeFont.doDeferredInitialisation(CompositeFont.java:287)
at sun.font.CompositeFont.getSlotFont(CompositeFont.java:376)
at sun.font.CompositeStrike.getStrikeForSlot(CompositeStrike.java:82)
at sun.font.CompositeStrike.getFontMetrics(CompositeStrike.java:97)
at sun.font.FontDesignMetrics.initMatrixAndMetrics(FontDesignMetrics.java:359)
at sun.font.FontDesignMetrics.<init>(FontDesignMetrics.java:350)
at sun.font.FontDesignMetrics.getMetrics(FontDesignMetrics.java:302)
at sun.java2d.SunGraphics2D.getFontMetrics(SunGraphics2D.java:855)
at uk.ac.babraham.FastQC.Graphs.QualityBoxPlot.paint(QualityBoxPlot.java:88)
at javax.swing.JComponent.print(JComponent.java:1202)
at uk.ac.babraham.FastQC.Modules.AbstractQCModule.writeDefaultImage(AbstractQCModule.java:68)
at uk.ac.babraham.FastQC.Modules.PerBaseQualityScores.makeReport(PerBaseQualityScores.java:199)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:131)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
at java.lang.Thread.run(Thread.java:748)
Work dir:
/mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Nov-29 01:04:48.628 [Task monitor] INFO nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
Nov-29 01:04:48.656 [Task monitor] INFO nextflow.Nextflow - N E X T F L O W ~ version 18.10.1 5003
Nov-29 01:04:48.658 [Task monitor] INFO nextflow.Nextflow - nf-core/ExoSeq ANALYSIS WORKFLOW ~ 1.0dev - b8629886d3
Nov-29 01:04:48.659 [Task monitor] INFO nextflow.Nextflow - Workflow execution stopped with the following message:
Nov-29 01:04:48.660 [Task monitor] INFO nextflow.Nextflow - at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1106)
at sun.font.CompositeFont.doDeferredInitialisation(CompositeFont.java:287)
at sun.font.CompositeFont.getSlotFont(CompositeFont.java:376)
at sun.font.CompositeStrike.getStrikeForSlot(CompositeStrike.java:82)
at sun.font.CompositeStrike.getFontMetrics(CompositeStrike.java:97)
at sun.font.FontDesignMetrics.initMatrixAndMetrics(FontDesignMetrics.java:359)
at sun.font.FontDesignMetrics.<init>(FontDesignMetrics.java:350)
at sun.font.FontDesignMetrics.getMetrics(FontDesignMetrics.java:302)
at sun.java2d.SunGraphics2D.getFontMetrics(SunGraphics2D.java:855)
at uk.ac.babraham.FastQC.Graphs.QualityBoxPlot.paint(QualityBoxPlot.java:88)
at javax.swing.JComponent.print(JComponent.java:1202)
at uk.ac.babraham.FastQC.Modules.AbstractQCModule.writeDefaultImage(AbstractQCModule.java:68)
at uk.ac.babraham.FastQC.Modules.PerBaseQualityScores.makeReport(PerBaseQualityScores.java:199)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:131)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
at java.lang.Thread.run(Thread.java:748)
Nov-29 01:04:48.665 [main] DEBUG nextflow.Session - Session await > all process finished
Nov-29 01:04:48.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: fastqc (318616_S1_L002); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (12h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/d0/84e16e8be4d3c9eaafa90b33b5d8bd]
Nov-29 01:04:48.683 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: fastqc (318616_S1_L004); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (12h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/3f/831e1e0f2dbdd8a038a27b3c5642fb]
Nov-29 01:04:48.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: fastqc (318616_S1_L003); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (12h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/0f/434757483278123781b0b4f3add9a9]
Nov-29 01:04:48.695 [Actor Thread 19] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc)
Nov-29 01:04:54.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:09:54.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:14:54.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:19:54.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:24:54.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:29:54.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:34:54.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:39:54.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:44:54.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:49:54.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:54:55.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 01:59:55.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:04:55.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:09:55.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:14:55.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:19:55.290 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:24:55.328 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:29:55.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:34:55.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:39:55.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:44:55.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:49:55.572 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:54:55.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 02:59:55.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:04:55.721 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:09:55.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:14:55.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:19:55.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:24:55.905 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:29:55.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:34:55.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:39:56.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:44:56.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:49:56.115 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:54:56.136 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 03:59:56.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:04:56.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:09:56.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:14:56.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:19:56.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:24:56.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:29:56.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:34:56.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:39:56.419 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:44:56.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:49:56.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:54:56.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 04:59:56.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below
~> TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
~> TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
~> TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
~> TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: RUNNING; exit: -; error: -; workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 05:04:48.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: trim_galore (318616_S1_L002); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (16h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/9b/87fde49871dd3d0acd0cf8b6ca12d8]
Nov-29 05:04:48.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: trim_galore (318616_S1_L001); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (16h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/1f/ad61c32b23fee1146527afbfb65151]
Nov-29 05:04:48.792 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: trim_galore (318616_S1_L004); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (16h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/24/6d112ba71104c616e9c7076be67b31]
Nov-29 05:04:48.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: trim_galore (318616_S1_L003); status: COMPLETED; exit: -; error: nextflow.exception.ProcessException: Process exceeded running time limit (16h); workDir: /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/ce/1f6f8cf6d1fcdaf24b950bc2d81cea]
Nov-29 05:04:48.802 [Actor Thread 19] DEBUG nextflow.Session - <<< barrier arrive (process: trim_galore)
Nov-29 05:04:48.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local)
Nov-29 05:04:48.811 [main] DEBUG nextflow.Session - Session await > all barriers passed
Nov-29 05:04:48.821 [main] INFO nextflow.Nextflow - N E X T F L O W ~ version 18.10.1 5003
Nov-29 05:04:48.822 [main] INFO nextflow.Nextflow - nf-core/ExoSeq ANALYSIS WORKFLOW ~ 1.0dev - b8629886d3
Nov-29 05:04:48.823 [main] INFO nextflow.Nextflow - Command Line: nextflow run exoseq/PairedSingleSampleWF.nf -with-docker nfcore/exoseq:gatkfix --reads /mnt/fargen/150123_NS500347_0004_AH2CKVAFXX/Data/Intensities/BaseCalls/318616*_L00*_R{1,2}_*.fastq.gz -c custom_docker.config
Nov-29 05:04:48.823 [main] INFO nextflow.Nextflow - Project Dir : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/exoseq
Nov-29 05:04:48.824 [main] INFO nextflow.Nextflow - Launch Dir : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015
Nov-29 05:04:48.825 [main] INFO nextflow.Nextflow - Work Dir : /mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work
Nov-29 05:04:48.825 [main] INFO nextflow.Nextflow - Out Dir : ./results
Nov-29 05:04:48.826 [main] INFO nextflow.Nextflow - Genome : /mnt/fargen/resources/grch38_reference/refdata-GRCh38-2.1.0/fasta/genome.fa
Nov-29 05:04:48.828 [main] INFO nextflow.Nextflow - Completed at: Thu Nov 29 05:04:48 WET 2018
Nov-29 05:04:48.829 [main] INFO nextflow.Nextflow - Duration : 16h 2s
Nov-29 05:04:48.830 [main] INFO nextflow.Nextflow - Success : false
Nov-29 05:04:48.830 [main] INFO nextflow.Nextflow - Exit status : null
Nov-29 05:04:48.831 [main] INFO nextflow.Nextflow - Error report: Error executing process > 'fastqc (318616_S1_L001)'
Caused by:
Process exceeded running time limit (12h)
Command executed:
fastqc -q 318616_S1_L001_R1_001.fastq.gz 318616_S1_L001_R2_001.fastq.gz
Command exit status:
-
Command output:
(empty)
Command error:
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1100)
at sun.font.SunFontManager.findOtherDeferredFont(SunFontManager.java:1037)
at sun.font.SunFontManager.findDeferredFont(SunFontManager.java:1054)
at sun.font.SunFontManager.findFont2D(SunFontManager.java:2256)
at sun.font.SunFontManager.getDefaultPhysicalFont(SunFontManager.java:1220)
at sun.font.SunFontManager.initialiseDeferredFont(SunFontManager.java:1106)
at sun.font.CompositeFont.doDeferredInitialisation(CompositeFont.java:287)
at sun.font.CompositeFont.getSlotFont(CompositeFont.java:376)
at sun.font.CompositeStrike.getStrikeForSlot(CompositeStrike.java:82)
at sun.font.CompositeStrike.getFontMetrics(CompositeStrike.java:97)
at sun.font.FontDesignMetrics.initMatrixAndMetrics(FontDesignMetrics.java:359)
at sun.font.FontDesignMetrics.<init>(FontDesignMetrics.java:350)
at sun.font.FontDesignMetrics.getMetrics(FontDesignMetrics.java:302)
at sun.java2d.SunGraphics2D.getFontMetrics(SunGraphics2D.java:855)
at uk.ac.babraham.FastQC.Graphs.QualityBoxPlot.paint(QualityBoxPlot.java:88)
at javax.swing.JComponent.print(JComponent.java:1202)
at uk.ac.babraham.FastQC.Modules.AbstractQCModule.writeDefaultImage(AbstractQCModule.java:68)
at uk.ac.babraham.FastQC.Modules.PerBaseQualityScores.makeReport(PerBaseQualityScores.java:199)
at uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:131)
at uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:178)
at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:110)
at java.lang.Thread.run(Thread.java:748)
Work dir:
/mnt/fargen/experiments/30-10-2018_linked_read_pipeline/wes2015/work/da/d935a05dd0dd20444d6f919a975b09
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Nov-29 05:04:48.845 [main] DEBUG nextflow.trace.StatsObserver - Workflow completed > WorkflowStats[succeedCount=2; failedCount=8; ignoredCount=0; cachedCount=0; succeedDuration=7.5s; failedDuration=7d 8h 1s; cachedDuration=0ms]
Nov-29 05:04:48.845 [main] DEBUG nextflow.trace.TraceFileObserver - Flow completing -- flushing trace file
Nov-29 05:04:48.862 [main] DEBUG nextflow.trace.ReportObserver - Flow completing -- rendering html report
Nov-29 05:04:48.946 [main] DEBUG nextflow.trace.ReportObserver - Execution report summary data:
{"get_software_versions":{"cpu":{"mean":127.8,"min":127.8,"q1":127.8,"q2":127.8,"q3":127.8,"max":127.8,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"mem":{"mean":4269776896,"min":4269776896,"q1":4269776896,"q2":4269776896,"q3":4269776896,"max":4269776896,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"time":{"mean":7393,"min":7393,"q1":7393,"q2":7393,"q3":7393,"max":7393,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"reads":null,"writes":{"mean":143360,"min":143360,"q1":143360,"q2":143360,"q3":143360,"max":143360,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"cpuUsage":{"mean":127.8,"min":127.8,"q1":127.8,"q2":127.8,"q3":127.8,"max":127.8,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"memUsage":{"mean":49.71,"min":49.71,"q1":49.71,"q2":49.71,"q3":49.71,"max":49.71,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"timeUsage":{"mean":0.1,"min":0.1,"q1":0.1,"q2":0.1,"q3":0.1,"max":0.1,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"}},"fastqc":{"cpu":{"mean":200.8,"min":178.2,"q1":188.7,"q2":198,"q3":210.1,"max":229,"minLabel":"fastqc (318616_S1_L003)","maxLabel":"fastqc (318616_S1_L004)","q1Label":"fastqc (318616_S1_L003)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L001)"},"mem":{"mean":3329658880,"min":3329658880,"q1":3329658880,"q2":3329658880,"q3":3329658880,"max":3329658880,"minLabel":"fastqc (318616_S1_L001)","maxLabel":"fastqc (318616_S1_L003)","q1Label":"fastqc (318616_S1_L001)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L004)"},"time":{"mean":43200040,"min":43200023,"q1":43200036.5,"q2":43200043,"q3":43200046.5,"max":43200051,"minLabel":"fastqc (318616_S1_L001)","maxLabel":"fastqc (318616_S1_L003)","q1Label":"fastqc (318616_S1_L001)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L004)"},"reads":null,"writes":{"mean":11963392,"min":11956224,"q1":11962368,"q2":11964416,"q3":11965440,"max":11968512,"minLabel":"fastqc (318616_S1_L001)","maxLabel":"fastqc (318616_S1_L003)","q1Label":"fastqc (318616_S1_L001)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L004)"},"cpuUsage":{"mean":200.8,"min":178.2,"q1":188.7,"q2":198,"q3":210.1,"max":229,"minLabel":"fastqc (318616_S1_L003)","maxLabel":"fastqc (318616_S1_L004)","q1Label":"fastqc (318616_S1_L003)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L001)"},"memUsage":{"mean":38.76,"min":38.76,"q1":38.76,"q2":38.76,"q3":38.76,"max":38.76,"minLabel":"fastqc (318616_S1_L001)","maxLabel":"fastqc (318616_S1_L003)","q1Label":"fastqc (318616_S1_L001)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L004)"},"timeUsage":{"mean":100,"min":100,"q1":100,"q2":100,"q3":100,"max":100,"minLabel":"fastqc (318616_S1_L001)","maxLabel":"fastqc (318616_S1_L003)","q1Label":"fastqc (318616_S1_L001)","q2Label":"fastqc (318616_S1_L002)","q3Label":"fastqc (318616_S1_L004)"}},"GenerateMultiQCconfig":{"cpu":null,"mem":{"mean":20185088,"min":20185088,"q1":20185088,"q2":20185088,"q3":20185088,"max":20185088,"minLabel":"GenerateMultiQCconfig","maxLabel":"GenerateMultiQCconfig","q1Label":"GenerateMultiQCconfig","q2Label":"GenerateMultiQCconfig","q3Label":"GenerateMultiQCconfig"},"time":{"mean":96,"min":96,"q1":96,"q2":96,"q3":96,"max":96,"minLabel":"GenerateMultiQCconfig","maxLabel":"GenerateMultiQCconfig","q1Label":"GenerateMultiQCconfig","q2Label":"GenerateMultiQCconfig","q3Label":"GenerateMultiQCconfig"},"reads":null,"writes":{"mean":4096,"min":4096,"q1":4096,"q2":4096,"q3":4096,"max":4096,"minLabel":"GenerateMultiQCconfig","maxLabel":"GenerateMultiQCconfig","q1Label":"GenerateMultiQCconfig","q2Label":"GenerateMultiQCconfig","q3Label":"GenerateMultiQCconfig"},"cpuUsage":null,"memUsage":{"mean":0.23,"min":0.23,"q1":0.23,"q2":0.23,"q3":0.23,"max":0.23,"minLabel":"GenerateMultiQCconfig","maxLabel":"GenerateMultiQCconfig","q1Label":"GenerateMultiQCconfig","q2Label":"GenerateMultiQCconfig","q3Label":"GenerateMultiQCconfig"},"timeUsage":null},"trim_galore":{"cpu":{"mean":255.43,"min":249.7,"q1":250.68,"q2":255.75,"q3":260.5,"max":260.5,"minLabel":"trim_galore (318616_S1_L004)","maxLabel":"trim_galore (318616_S1_L003)","q1Label":"trim_galore (318616_S1_L004)","q2Label":"trim_galore (318616_S1_L002)","q3Label":"trim_galore (318616_S1_L001)"},"mem":{"mean":3358336000,"min":3358334976,"q1":3358334976,"q2":3358334976,"q3":3358336000,"max":3358339072,"minLabel":"trim_galore (318616_S1_L002)","maxLabel":"trim_galore (318616_S1_L004)","q1Label":"trim_galore (318616_S1_L002)","q2Label":"trim_galore (318616_S1_L001)","q3Label":"trim_galore (318616_S1_L003)"},"time":{"mean":57600053,"min":57600045,"q1":57600047.25,"q2":57600052,"q3":57600057.75,"max":57600063,"minLabel":"trim_galore (318616_S1_L002)","maxLabel":"trim_galore (318616_S1_L003)","q1Label":"trim_galore (318616_S1_L002)","q2Label":"trim_galore (318616_S1_L001)","q3Label":"trim_galore (318616_S1_L004)"},"reads":null,"writes":{"mean":461875200,"min":455241728,"q1":459628544,"q2":461389824,"q3":463636480,"max":469479424,"minLabel":"trim_galore (318616_S1_L002)","maxLabel":"trim_galore (318616_S1_L003)","q1Label":"trim_galore (318616_S1_L002)","q2Label":"trim_galore (318616_S1_L001)","q3Label":"trim_galore (318616_S1_L004)"},"cpuUsage":{"mean":127.71,"min":124.85,"q1":125.34,"q2":127.88,"q3":130.25,"max":130.25,"minLabel":"trim_galore (318616_S1_L004)","maxLabel":"trim_galore (318616_S1_L003)","q1Label":"trim_galore (318616_S1_L004)","q2Label":"trim_galore (318616_S1_L002)","q3Label":"trim_galore (318616_S1_L001)"},"memUsage":{"mean":39.1,"min":39.1,"q1":39.1,"q2":39.1,"q3":39.1,"max":39.1,"minLabel":"trim_galore (318616_S1_L002)","maxLabel":"trim_galore (318616_S1_L004)","q1Label":"trim_galore (318616_S1_L002)","q2Label":"trim_galore (318616_S1_L001)","q3Label":"trim_galore (318616_S1_L003)"},"timeUsage":{"mean":100,"min":100,"q1":100,"q2":100,"q3":100,"max":100,"minLabel":"trim_galore (318616_S1_L002)","maxLabel":"trim_galore (318616_S1_L003)","q1Label":"trim_galore (318616_S1_L002)","q2Label":"trim_galore (318616_S1_L001)","q3Label":"trim_galore (318616_S1_L004)"}}}
Nov-29 05:04:50.284 [main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline
Nov-29 05:04:50.470 [main] WARN nextflow.dag.GraphvizRenderer - To render the execution DAG in the required format it is required to install Graphviz -- See http://www.graphviz.org for more info.
Nov-29 05:04:50.507 [main] DEBUG nextflow.CacheDB - Closing CacheDB done
Nov-29 05:04:50.555 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
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