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@olgabot
Created March 18, 2013 16:12
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FASTQC tests
{"description":"FASTQC tests","endpoint":"","display":"svg","public":true,"require":[{"name":"d3","url":"http://d3js.org/d3.v3.min.js"},{"name":"jQuery","url":"http://code.jquery.com/jquery-1.9.1.min.js"}],"fileconfigs":{"_.md":{"default":true,"vim":false,"emacs":false,"fontSize":12},"config.json":{"default":true,"vim":false,"emacs":false,"fontSize":12},"inlet.js":{"default":true,"vim":false,"emacs":false,"fontSize":12},"inlet.svg":{"default":true,"vim":false,"emacs":false,"fontSize":12},"fastqc_tests.js":{"default":true,"vim":false,"emacs":false,"fontSize":12},"metadata.csv":{"default":true,"vim":false,"emacs":false,"fontSize":12},"fastqc.css":{"default":true,"vim":false,"emacs":false,"fontSize":12}},"fullscreen":false,"play":false,"loop":false,"restart":false,"autoinit":true,"pause":true,"loop_type":"period","bv":false,"nclones":15,"clone_opacity":0.4,"duration":3000,"ease":"linear","dt":0.01,"editor_editor":{"coffee":false,"vim":false,"emacs":false,"width":600,"height":300,"hide":false}}
body {
font: 10px sans-serif;
}
svg {
padding: 10px 0 0 10px;
}
.arc {
stroke: #fff;
}
var radius = 45,
padding = 10;
var color = d3.scale.ordinal()
.range(["#3182bd", "#6baed6", "#ffffff"]);
var test_colors_scale = d3.scale.ordinal()
.range()
var test_colors = {
"PASS": "#31a354",
"WARN": "#FD8D3C",
"FAIL": "#E6550D"
};
var test_colors_colorbrewer = {
// Derived from "Paired" set of ColorBrewer
'R1': {
"PASS": "#1F78B4", // Dark blue
"WARN": "#FF7F00", // Dark orange
"FAIL": "#E31A1C" // Dark red
},
'R2': {
"PASS": "#A6CEE3", // Light blue
"WARN": "#FDBF6F", // Light orange
"FAIL": "#FB9A99" // Light red
}
}
// Derived from "Paired" set of ColorBrewer
var r1Colors = d3.scale.ordinal()
.domain(['PASS', 'WARN', 'FAIL'])
.range(['#1F78B4', '#FF7F00', '#E31A1C']);
var r2Colors = d3.scale.ordinal()
.domain(['PASS', 'WARN', 'FAIL'])
.range(['#A6CEE3', '#FDBF6F', '#FB9A99']);
var test_names = {
R1: [],
R2: []
};
//document.write(color)
var arc = d3.svg.arc()
.outerRadius(radius)
.innerRadius(radius - radius / 2);
var pie = d3.layout.pie()
.sort(null)
.value(function (d) {
return d.population;
});
d3.csv("metadata.csv", function (data) {
// console.log(JSON.stringify(data))
d3.select("body").selectAll("p")
.data(data)
.enter();
// .append("p")
// .text(data.read1);
data.forEach(function (d) {
// Initialize the test_names variable by looping over the keys
// if this is the first iteration of the loop
if (test_names['R1'].length === 0) {
for (var key in d) {
if (/read\d_test\d+_/.test(key)) {
if (/read1/.test(key)) {
test_names.R1.push(key);
} else {
test_names.R2.push(key);
}
}
}
// console.log("created test_names")
} //else {
// console.log("did not create test_names")
// };
if (d.read1_fastqc_report != "no_experiment") {
d.read_colors = {
"R2": color('Read 2'),
'R1': color('Read 1')
};
d.links = {
"R2": d.read2_fastqc_report,
'R1': d.read1_fastqc_report
};
d.if_experiment = true;
// 'v' is one of test_names
// 'n' is one of R1, R2
d.test_colors = function (n, v) {
if (n === 'R1') {
return r1Colors(v);
} else {
return r2Colors(v);
}
};
// {
// // 'v' is one of test_names
// 'R1': function(v, i){
// return test_colors[d[v]];
// },
// 'R2': function(v, i){
// return test_colors[d[v]];
// }
} else {
d.read_colors = {
"R1": '#FFFFFF',
"R2": '#FFFFFF'
};
d.links = {
"R2": "#",
'R1': "#"
};
d.if_experiment = false;
}
d.reads = color.domain().map(function (name) {
var get_short_name = function (name) {
var names = {}
names["Read 1"] = "R1";
names["Read 2"] = "R2";
return names[name];
};
//return {name: name, population: 50};
return {
name: name,
population: 50,
short_name: get_short_name(name),
test_names: test_names,
colors: d.test_colors,
links: d.links
};
});
// window.console.log(d);
});
var legend = d3.select("body").append("svg")
.attr("class", "legend")
.attr("width", radius * 2)
.attr("height", radius * 2)
.selectAll("g")
.data(color.domain().slice().reverse())
.enter().append("g")
.attr("transform", function (d, i) {
return "translate(0," + i * 20 + ")";
});
legend.append("rect")
.attr("width", 18)
.attr("height", 18)
.style("fill", color);
legend.append("text")
.attr("x", 24)
.attr("y", 9)
.attr("dy", ".35em")
.text(function (d) {
return d;
});
d3.select("body").append("p").text("");
var svg = d3.select("body").selectAll(".pie")
.data(data)
.enter().append("svg")
.attr("class", "pie")
.attr("width", radius * 2)
.attr("height", radius * 2)
.append("g")
.attr("transform", function (d, i) {
return "translate(" + radius + "," + radius + ")"
});
svg.selectAll(".arc")
.data(function (d) {
return pie(d.reads);
})
.enter().append("path")
.attr("class", "arc")
.attr("d", arc)
.attr('xlink:href',
function (d) {
return d.data.links[d.data.short_name];
})
.on('click',
function (d) {
window.open(d.data.links[d.data.short_name], "_blank");
})
.style("fill", function (d, i) {
return d.data.colors(d.data.short_name, test_names[i]);
});
svg.append("text")
.attr("dy", ".35em")
.style("text-anchor", "middle")
.text(function (d) {
return d.short_id;
});
svg.append("text")
.attr("dx", 28)
.attr("dy", ".35em")
.style("text-anchor", "right")
.text(function (d) {
if (d.if_experiment) {
return 'R2'
} else {
return " "
}
});
svg.append("text")
.attr("dx", -38)
.attr("dy", ".35em")
.style("text-anchor", "left")
.text(function (d) {
if (d.if_experiment) {
return 'R1'
} else {
return " "
}
});
// $(".arc").onclick(function(){transition().duration(1000)});
$(".arc").tipsy({
gravity: $.fn.tipsy.autoNS,
html: true,
title: function () {
// var d = this.__data__, c = colors(d.i);
return 'Click here to see the FASTQC report for';
}
});
});
short_id full_id read1_fastqc_report read2_fastqc_report read1_test1_basic_stats read1_test2_base_quality read1_test3_sequence_quality read1_test4_base_sequence_content read1_test5_base_gc read1_test6_seq_gc read1_test7_base_n read1_test8_seq_len read1_test9_seq_dup read1_test10_overrep_seq read1_test11_kmer_content read2_test1_basic_stats read2_test2_base_quality read2_test3_sequence_quality read2_test4_base_sequence_content read2_test5_base_gc read2_test6_seq_gc read2_test7_base_n read2_test8_seq_len read2_test9_seq_dup read2_test10_overrep_seq read2_test11_kmer_content
A1 Sample_A1 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A2 Sample_A2 Sample_A2/R1_fastqc/fastqc_report.html Sample_A2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
A3 Sample_A3 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A4 Sample_A4 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A5 Sample_A5 Sample_A5/R1_fastqc/fastqc_report.html Sample_A5/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
A6 Sample_A6 Sample_A6/R1_fastqc/fastqc_report.html Sample_A6/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
A7 Sample_A7 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A8 Sample_A8 Sample_A8/R1_fastqc/fastqc_report.html Sample_A8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
A9 Sample_A9 Sample_A9/R1_fastqc/fastqc_report.html Sample_A9/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
A10 Sample_A10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A11 Sample_A11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
A12 Sample_A12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B1 Sample_B1 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B2 Sample_B2 Sample_B2/R1_fastqc/fastqc_report.html Sample_B2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B3 Sample_B3 Sample_B3/R1_fastqc/fastqc_report.html Sample_B3/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B4 Sample_B4 Sample_B4/R1_fastqc/fastqc_report.html Sample_B4/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B5 Sample_B5 Sample_B5/R1_fastqc/fastqc_report.html Sample_B5/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B6 Sample_B6 Sample_B6/R1_fastqc/fastqc_report.html Sample_B6/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B7 Sample_B7 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B8 Sample_B8 Sample_B8/R1_fastqc/fastqc_report.html Sample_B8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
B9 Sample_B9 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B10 Sample_B10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B11 Sample_B11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
B12 Sample_B12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C1 Sample_C1 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C2 Sample_C2 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C3 Sample_C3 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C4 Sample_C4 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C5 Sample_C5 Sample_C5/R1_fastqc/fastqc_report.html Sample_C5/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
C6 Sample_C6 Sample_C6/R1_fastqc/fastqc_report.html Sample_C6/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL PASS WARN PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN PASS FAIL
C7 Sample_C7 Sample_C7/R1_fastqc/fastqc_report.html Sample_C7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
C8 Sample_C8 Sample_C8/R1_fastqc/fastqc_report.html Sample_C8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
C9 Sample_C9 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C10 Sample_C10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C11 Sample_C11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
C12 Sample_C12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
D1 Sample_D1 Sample_D1/R1_fastqc/fastqc_report.html Sample_D1/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D2 Sample_D2 Sample_D2/R1_fastqc/fastqc_report.html Sample_D2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D3 Sample_D3 Sample_D3/R1_fastqc/fastqc_report.html Sample_D3/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D4 Sample_D4 Sample_D4/R1_fastqc/fastqc_report.html Sample_D4/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN PASS WARN PASS FAIL PASS FAIL FAIL PASS PASS PASS PASS PASS WARN
D5 Sample_D5 Sample_D5/R1_fastqc/fastqc_report.html Sample_D5/R2_fastqc/fastqc_report.html PASS FAIL PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D6 Sample_D6 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
D7 Sample_D7 Sample_D7/R1_fastqc/fastqc_report.html Sample_D7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D8 Sample_D8 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
D9 Sample_D9 Sample_D9/R1_fastqc/fastqc_report.html Sample_D9/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
D10 Sample_D10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
D11 Sample_D11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
D12 Sample_D12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E1 Sample_E1 Sample_E1/R1_fastqc/fastqc_report.html Sample_E1/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
E2 Sample_E2 Sample_E2/R1_fastqc/fastqc_report.html Sample_E2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
E3 Sample_E3 Sample_E3/R1_fastqc/fastqc_report.html Sample_E3/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
E4 Sample_E4 Sample_E4/R1_fastqc/fastqc_report.html Sample_E4/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
E5 Sample_E5 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E6 Sample_E6 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E7 Sample_E7 Sample_E7/R1_fastqc/fastqc_report.html Sample_E7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN PASS WARN PASS FAIL PASS FAIL FAIL PASS PASS PASS PASS PASS WARN
E8 Sample_E8 Sample_E8/R1_fastqc/fastqc_report.html Sample_E8/R2_fastqc/fastqc_report.html PASS FAIL PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
E9 Sample_E9 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E10 Sample_E10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E11 Sample_E11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
E12 Sample_E12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
F1 Sample_F1 Sample_F1/R1_fastqc/fastqc_report.html Sample_F1/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F2 Sample_F2 Sample_F2/R1_fastqc/fastqc_report.html Sample_F2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS PASS WARN FAIL
F3 Sample_F3 Sample_F3/R1_fastqc/fastqc_report.html Sample_F3/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F4 Sample_F4 Sample_F4/R1_fastqc/fastqc_report.html Sample_F4/R2_fastqc/fastqc_report.html PASS FAIL PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F5 Sample_F5 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
F6 Sample_F6 Sample_F6/R1_fastqc/fastqc_report.html Sample_F6/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F7 Sample_F7 Sample_F7/R1_fastqc/fastqc_report.html Sample_F7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F8 Sample_F8 Sample_F8/R1_fastqc/fastqc_report.html Sample_F8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F9 Sample_F9 Sample_F9/R1_fastqc/fastqc_report.html Sample_F9/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
F10 Sample_F10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
F11 Sample_F11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
F12 Sample_F12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G1 Sample_G1 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G2 Sample_G2 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G3 Sample_G3 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G4 Sample_G4 Sample_G4/R1_fastqc/fastqc_report.html Sample_G4/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G5 Sample_G5 Sample_G5/R1_fastqc/fastqc_report.html Sample_G5/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G6 Sample_G6 Sample_G6/R1_fastqc/fastqc_report.html Sample_G6/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G7 Sample_G7 Sample_G7/R1_fastqc/fastqc_report.html Sample_G7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G8 Sample_G8 Sample_G8/R1_fastqc/fastqc_report.html Sample_G8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G9 Sample_G9 Sample_G9/R1_fastqc/fastqc_report.html Sample_G9/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
G10 Sample_G10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G11 Sample_G11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
G12 Sample_G12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H1 Sample_H1 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H2 Sample_H2 Sample_H2/R1_fastqc/fastqc_report.html Sample_H2/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H3 Sample_H3 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H4 Sample_H4 Sample_H4/R1_fastqc/fastqc_report.html Sample_H4/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H5 Sample_H5 Sample_H5/R1_fastqc/fastqc_report.html Sample_H5/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H6 Sample_H6 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H7 Sample_H7 Sample_H7/R1_fastqc/fastqc_report.html Sample_H7/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS FAIL WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H8 Sample_H8 Sample_H8/R1_fastqc/fastqc_report.html Sample_H8/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H9 Sample_H9 Sample_H9/R1_fastqc/fastqc_report.html Sample_H9/R2_fastqc/fastqc_report.html PASS PASS PASS FAIL FAIL PASS PASS PASS WARN WARN FAIL PASS FAIL FAIL FAIL FAIL PASS PASS PASS WARN WARN FAIL
H10 Sample_H10 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H11 Sample_H11 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
H12 Sample_H12 no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment no_experiment
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