[ Launch: Tributary inlet ] 5188370 by olgabot
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Tributary inlet
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| {"description":"Tributary inlet","endpoint":"","display":"svg","public":true,"require":[],"fileconfigs":{"inlet.js":{"default":true,"vim":false,"emacs":false,"fontSize":12}},"fullscreen":false,"play":false,"loop":false,"restart":false,"autoinit":true,"pause":true,"loop_type":"period","bv":false,"nclones":15,"clone_opacity":0.4,"duration":3000,"ease":"linear","dt":0.01} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| metadata = {{ | |
| "short_id": "A1", | |
| "full_id": "Sample_A1", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A2", | |
| "full_id": "Sample_A2", | |
| "read1_fastqc_report": "Sample_A2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_A2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "A3", | |
| "full_id": "Sample_A3", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A4", | |
| "full_id": "Sample_A4", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A5", | |
| "full_id": "Sample_A5", | |
| "read1_fastqc_report": "Sample_A5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_A5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "A6", | |
| "full_id": "Sample_A6", | |
| "read1_fastqc_report": "Sample_A6/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_A6/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "A7", | |
| "full_id": "Sample_A7", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A8", | |
| "full_id": "Sample_A8", | |
| "read1_fastqc_report": "Sample_A8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_A8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "A9", | |
| "full_id": "Sample_A9", | |
| "read1_fastqc_report": "Sample_A9/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_A9/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "A10", | |
| "full_id": "Sample_A10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A11", | |
| "full_id": "Sample_A11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "A12", | |
| "full_id": "Sample_A12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B1", | |
| "full_id": "Sample_B1", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B2", | |
| "full_id": "Sample_B2", | |
| "read1_fastqc_report": "Sample_B2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B3", | |
| "full_id": "Sample_B3", | |
| "read1_fastqc_report": "Sample_B3/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B3/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B4", | |
| "full_id": "Sample_B4", | |
| "read1_fastqc_report": "Sample_B4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B5", | |
| "full_id": "Sample_B5", | |
| "read1_fastqc_report": "Sample_B5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B6", | |
| "full_id": "Sample_B6", | |
| "read1_fastqc_report": "Sample_B6/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B6/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B7", | |
| "full_id": "Sample_B7", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B8", | |
| "full_id": "Sample_B8", | |
| "read1_fastqc_report": "Sample_B8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_B8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "B9", | |
| "full_id": "Sample_B9", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B10", | |
| "full_id": "Sample_B10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B11", | |
| "full_id": "Sample_B11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "B12", | |
| "full_id": "Sample_B12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C1", | |
| "full_id": "Sample_C1", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C2", | |
| "full_id": "Sample_C2", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C3", | |
| "full_id": "Sample_C3", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C4", | |
| "full_id": "Sample_C4", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C5", | |
| "full_id": "Sample_C5", | |
| "read1_fastqc_report": "Sample_C5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_C5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "C6", | |
| "full_id": "Sample_C6", | |
| "read1_fastqc_report": "Sample_C6/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_C6/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "PASS", | |
| "read1_test11_kmer_content": "WARN", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "PASS", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "C7", | |
| "full_id": "Sample_C7", | |
| "read1_fastqc_report": "Sample_C7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_C7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "C8", | |
| "full_id": "Sample_C8", | |
| "read1_fastqc_report": "Sample_C8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_C8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "C9", | |
| "full_id": "Sample_C9", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C10", | |
| "full_id": "Sample_C10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C11", | |
| "full_id": "Sample_C11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "C12", | |
| "full_id": "Sample_C12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "D1", | |
| "full_id": "Sample_D1", | |
| "read1_fastqc_report": "Sample_D1/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D1/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D2", | |
| "full_id": "Sample_D2", | |
| "read1_fastqc_report": "Sample_D2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D3", | |
| "full_id": "Sample_D3", | |
| "read1_fastqc_report": "Sample_D3/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D3/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D4", | |
| "full_id": "Sample_D4", | |
| "read1_fastqc_report": "Sample_D4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "PASS", | |
| "read1_test11_kmer_content": "WARN", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "PASS", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "PASS", | |
| "read2_test10_overrep_seq": "PASS", | |
| "read2_test11_kmer_content": "WARN" | |
| }, { | |
| "short_id": "D5", | |
| "full_id": "Sample_D5", | |
| "read1_fastqc_report": "Sample_D5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "FAIL", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D6", | |
| "full_id": "Sample_D6", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "D7", | |
| "full_id": "Sample_D7", | |
| "read1_fastqc_report": "Sample_D7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D8", | |
| "full_id": "Sample_D8", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "D9", | |
| "full_id": "Sample_D9", | |
| "read1_fastqc_report": "Sample_D9/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_D9/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "D10", | |
| "full_id": "Sample_D10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "D11", | |
| "full_id": "Sample_D11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "D12", | |
| "full_id": "Sample_D12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E1", | |
| "full_id": "Sample_E1", | |
| "read1_fastqc_report": "Sample_E1/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E1/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "E2", | |
| "full_id": "Sample_E2", | |
| "read1_fastqc_report": "Sample_E2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "E3", | |
| "full_id": "Sample_E3", | |
| "read1_fastqc_report": "Sample_E3/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E3/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "E4", | |
| "full_id": "Sample_E4", | |
| "read1_fastqc_report": "Sample_E4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "E5", | |
| "full_id": "Sample_E5", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E6", | |
| "full_id": "Sample_E6", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E7", | |
| "full_id": "Sample_E7", | |
| "read1_fastqc_report": "Sample_E7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "PASS", | |
| "read1_test11_kmer_content": "WARN", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "PASS", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "PASS", | |
| "read2_test10_overrep_seq": "PASS", | |
| "read2_test11_kmer_content": "WARN" | |
| }, { | |
| "short_id": "E8", | |
| "full_id": "Sample_E8", | |
| "read1_fastqc_report": "Sample_E8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_E8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "FAIL", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "E9", | |
| "full_id": "Sample_E9", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E10", | |
| "full_id": "Sample_E10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E11", | |
| "full_id": "Sample_E11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "E12", | |
| "full_id": "Sample_E12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "F1", | |
| "full_id": "Sample_F1", | |
| "read1_fastqc_report": "Sample_F1/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F1/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F2", | |
| "full_id": "Sample_F2", | |
| "read1_fastqc_report": "Sample_F2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "PASS", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F3", | |
| "full_id": "Sample_F3", | |
| "read1_fastqc_report": "Sample_F3/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F3/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F4", | |
| "full_id": "Sample_F4", | |
| "read1_fastqc_report": "Sample_F4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "FAIL", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F5", | |
| "full_id": "Sample_F5", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "F6", | |
| "full_id": "Sample_F6", | |
| "read1_fastqc_report": "Sample_F6/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F6/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F7", | |
| "full_id": "Sample_F7", | |
| "read1_fastqc_report": "Sample_F7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F8", | |
| "full_id": "Sample_F8", | |
| "read1_fastqc_report": "Sample_F8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F9", | |
| "full_id": "Sample_F9", | |
| "read1_fastqc_report": "Sample_F9/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_F9/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "F10", | |
| "full_id": "Sample_F10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "F11", | |
| "full_id": "Sample_F11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "F12", | |
| "full_id": "Sample_F12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G1", | |
| "full_id": "Sample_G1", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G2", | |
| "full_id": "Sample_G2", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G3", | |
| "full_id": "Sample_G3", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G4", | |
| "full_id": "Sample_G4", | |
| "read1_fastqc_report": "Sample_G4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G5", | |
| "full_id": "Sample_G5", | |
| "read1_fastqc_report": "Sample_G5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G6", | |
| "full_id": "Sample_G6", | |
| "read1_fastqc_report": "Sample_G6/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G6/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G7", | |
| "full_id": "Sample_G7", | |
| "read1_fastqc_report": "Sample_G7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G8", | |
| "full_id": "Sample_G8", | |
| "read1_fastqc_report": "Sample_G8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G9", | |
| "full_id": "Sample_G9", | |
| "read1_fastqc_report": "Sample_G9/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_G9/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "G10", | |
| "full_id": "Sample_G10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G11", | |
| "full_id": "Sample_G11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "G12", | |
| "full_id": "Sample_G12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H1", | |
| "full_id": "Sample_H1", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H2", | |
| "full_id": "Sample_H2", | |
| "read1_fastqc_report": "Sample_H2/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H2/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H3", | |
| "full_id": "Sample_H3", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H4", | |
| "full_id": "Sample_H4", | |
| "read1_fastqc_report": "Sample_H4/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H4/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H5", | |
| "full_id": "Sample_H5", | |
| "read1_fastqc_report": "Sample_H5/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H5/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H6", | |
| "full_id": "Sample_H6", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H7", | |
| "full_id": "Sample_H7", | |
| "read1_fastqc_report": "Sample_H7/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H7/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "FAIL", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H8", | |
| "full_id": "Sample_H8", | |
| "read1_fastqc_report": "Sample_H8/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H8/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H9", | |
| "full_id": "Sample_H9", | |
| "read1_fastqc_report": "Sample_H9/R1_fastqc/fastqc_report.html", | |
| "read2_fastqc_report": "Sample_H9/R2_fastqc/fastqc_report.html", | |
| "read1_test1_basic_stats": "PASS", | |
| "read1_test2_base_quality": "PASS", | |
| "read1_test3_sequence_quality": "PASS", | |
| "read1_test4_base_sequence_content": "FAIL", | |
| "read1_test5_base_gc": "FAIL", | |
| "read1_test6_seq_gc": "PASS", | |
| "read1_test7_base_n": "PASS", | |
| "read1_test8_seq_len": "PASS", | |
| "read1_test9_seq_dup": "WARN", | |
| "read1_test10_overrep_seq": "WARN", | |
| "read1_test11_kmer_content": "FAIL", | |
| "read2_test1_basic_stats": "PASS", | |
| "read2_test2_base_quality": "FAIL", | |
| "read2_test3_sequence_quality": "FAIL", | |
| "read2_test4_base_sequence_content": "FAIL", | |
| "read2_test5_base_gc": "FAIL", | |
| "read2_test6_seq_gc": "PASS", | |
| "read2_test7_base_n": "PASS", | |
| "read2_test8_seq_len": "PASS", | |
| "read2_test9_seq_dup": "WARN", | |
| "read2_test10_overrep_seq": "WARN", | |
| "read2_test11_kmer_content": "FAIL" | |
| }, { | |
| "short_id": "H10", | |
| "full_id": "Sample_H10", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H11", | |
| "full_id": "Sample_H11", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }, { | |
| "short_id": "H12", | |
| "full_id": "Sample_H12", | |
| "read1_fastqc_report": "no_experiment", | |
| "read2_fastqc_report": "no_experiment", | |
| "read1_test1_basic_stats": "no_experiment", | |
| "read1_test2_base_quality": "no_experiment", | |
| "read1_test3_sequence_quality": "no_experiment", | |
| "read1_test4_base_sequence_content": "no_experiment", | |
| "read1_test5_base_gc": "no_experiment", | |
| "read1_test6_seq_gc": "no_experiment", | |
| "read1_test7_base_n": "no_experiment", | |
| "read1_test8_seq_len": "no_experiment", | |
| "read1_test9_seq_dup": "no_experiment", | |
| "read1_test10_overrep_seq": "no_experiment", | |
| "read1_test11_kmer_content": "no_experiment", | |
| "read2_test1_basic_stats": "no_experiment", | |
| "read2_test2_base_quality": "no_experiment", | |
| "read2_test3_sequence_quality": "no_experiment", | |
| "read2_test4_base_sequence_content": "no_experiment", | |
| "read2_test5_base_gc": "no_experiment", | |
| "read2_test6_seq_gc": "no_experiment", | |
| "read2_test7_base_n": "no_experiment", | |
| "read2_test8_seq_len": "no_experiment", | |
| "read2_test9_seq_dup": "no_experiment", | |
| "read2_test10_overrep_seq": "no_experiment", | |
| "read2_test11_kmer_content": "no_experiment" | |
| }}; | |
| var radius = 45, | |
| padding = 10; | |
| var color = d3.scale.ordinal() | |
| .range(["#3182bd", "#6baed6", "#ffffff"]); | |
| var test_colors_scale = d3.scale.ordinal() | |
| .range() | |
| var test_colors = {"PASS": "#31a354", | |
| "WARN": "#fd8d3c", | |
| "FAIL": "#e6550d"}; | |
| var test_colors_colorbrewer = { | |
| // Derived from "Paired" set of ColorBrewer | |
| 'R1': { | |
| "PASS": "#1F78B4", // Dark blue | |
| "WARN": "#FF7F00", // Dark orange | |
| "FAIL": "#E31A1C" // Dark red | |
| }, | |
| 'R2': { | |
| "PASS": "#A6CEE3", // Light blue | |
| "WARN": "#FDBF6F", // Light orange | |
| "FAIL": "#FB9A99" // Light red | |
| } | |
| } | |
| // Derived from "Paired" set of ColorBrewer | |
| var r1Colors = d3.scale.ordinal() | |
| .domain(['PASS', 'WARN', 'FAIL']) | |
| .range(['#1F78B4', '#FF7F00', '#E31A1C']); | |
| var r2Colors = d3.scale.ordinal() | |
| .domain(['PASS', 'WARN', 'FAIL']) | |
| .range(['#A6CEE3', '#FDBF6F', '#FB9A99']); | |
| var test_names = { | |
| R1: [], | |
| R2: [] | |
| }; | |
| //document.write(color) | |
| var arc = d3.svg.arc() | |
| .outerRadius(radius) | |
| .innerRadius(radius - radius/2); | |
| var pie = d3.layout.pie() | |
| .sort(null) | |
| .value(function(d) { return d.population; }); | |
| d3.entries(metadata, function(data) { | |
| // console.log(JSON.stringify(data)) | |
| d3.select("body").selectAll("p") | |
| .data(data) | |
| .enter(); | |
| // .append("p") | |
| // .text(data.read1); | |
| data.forEach(function(d) { | |
| // Initialize the test_names variable by looping over the keys | |
| // if this is the first iteration of the loop | |
| if (test_names['R1'].length === 0){ | |
| for(var key in d) { | |
| if(/read\d_test\d+_/.test(key)){ | |
| if(/read1/.test(key)){ | |
| test_names.R1.push(key); | |
| } else { | |
| test_names.R2.push(key); | |
| } | |
| } | |
| } | |
| // console.log("created test_names") | |
| } //else { | |
| // console.log("did not create test_names") | |
| // }; | |
| if (d.read1_fastqc_report != "no_experiment"){ | |
| d.read_colors = {"R2": color('Read 2'), | |
| 'R1': color('Read 1')}; | |
| d.links = {"R2": d.read2_fastqc_report, | |
| 'R1': d.read1_fastqc_report}; | |
| d.if_experiment = true ; | |
| // 'v' is one of test_names | |
| // 'n' is one of R1, R2 | |
| d.test_colors = function(n, v){ | |
| if( n === 'R1' ){ | |
| return r1Colors(v) | |
| } else { | |
| return r2Colors(v) | |
| } | |
| }; | |
| // { | |
| // // 'v' is one of test_names | |
| // 'R1': function(v, i){ | |
| // return test_colors[d[v]]; | |
| // }, | |
| // 'R2': function(v, i){ | |
| // return test_colors[d[v]]; | |
| // } | |
| } else { | |
| d.read_colors = {"R1": '#FFFFFF', | |
| "R2": '#FFFFFF'}; | |
| d.links = {"R2": "#", 'R1': "#"}; | |
| d.if_experiment = false; | |
| } | |
| d.reads = color.domain().map(function(name){ | |
| var get_short_name = function (name) { | |
| var names = {} | |
| names["Read 1"] = "R1"; | |
| names["Read 2"] = "R2"; | |
| return names[name]; | |
| }; | |
| //return {name: name, population: 50}; | |
| return {name: name, | |
| population: 50, | |
| short_name: get_short_name(name), | |
| test_names : test_names, | |
| colors: d.test_colors, | |
| links: d.links}; | |
| }); | |
| // window.console.log(d); | |
| }); | |
| var legend = d3.select("body").append("svg") | |
| .attr("class", "legend") | |
| .attr("width", radius * 2) | |
| .attr("height", radius * 2) | |
| .selectAll("g") | |
| .data(color.domain().slice().reverse()) | |
| .enter().append("g") | |
| .attr("transform", function(d, i) { | |
| return "translate(0," + i * 20 + ")"; | |
| }); | |
| legend.append("rect") | |
| .attr("width", 18) | |
| .attr("height", 18) | |
| .style("fill", color); | |
| legend.append("text") | |
| .attr("x", 24) | |
| .attr("y", 9) | |
| .attr("dy", ".35em") | |
| .text(function(d) { return d; }); | |
| d3.select("body").append("p").text(""); | |
| var svg = d3.select("body").selectAll(".pie") | |
| .data(data) | |
| .enter().append("svg") | |
| .attr("class", "pie") | |
| .attr("width", radius * 2) | |
| .attr("height", radius * 2) | |
| .append("g") | |
| .attr("transform", function(d,i){ | |
| return "translate(" + radius + "," + radius + ")"}); | |
| svg.selectAll(".arc") | |
| .data(function(d) { return pie(d.reads); }) | |
| .enter().append("path") | |
| .attr("class", "arc") | |
| .attr("d", arc) | |
| .attr('xlink:href', | |
| function(d){ return d.data.links[d.data.short_name]; } ) | |
| .on('click', | |
| function (d) { | |
| window.open(d.data.links[d.data.short_name], "_blank"); } ) | |
| .style("fill", function(d, i) { | |
| return d.data.test_colors(d.data.short_name)[i]; }); | |
| svg.append("text") | |
| .attr("dy", ".35em") | |
| .style("text-anchor", "middle") | |
| .text(function(d) { return d.short_id; }); | |
| svg.append("text") | |
| .attr("dx", 28) | |
| .attr("dy", ".35em") | |
| .style("text-anchor", "right") | |
| .text( function(d){ if(d.if_experiment){ return 'R2' } | |
| else {return " "} }); | |
| svg.append("text") | |
| .attr("dx", -38) | |
| .attr("dy", ".35em") | |
| .style("text-anchor", "left") | |
| .text( function(d){ if(d.if_experiment){ return 'R1' } | |
| else {return " "} }); | |
| // $(".arc").onclick(function(){transition().duration(1000)}); | |
| $(".arc").tipsy({ | |
| gravity: $.fn.tipsy.autoNS, | |
| html: true, | |
| title: function() { | |
| // var d = this.__data__, c = colors(d.i); | |
| return 'Click here to see the FASTQC report for'; | |
| } | |
| }); | |
| }); |
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