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GEOparse - Failing test: `test_merge_and_average` fails with a TypeError
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ID_REF | VALUE | LogRatioError | PValueLogRatio | gProcessedSignal | rProcessedSignal | ID | GB_ACC | Gene_Desc | Gene_Sym | SPOT_ID | SEQUENCE | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 1 | -1.627476 | 0.1360 | 6.410000e-33 | 9130.0 | 215.00 | 1 | U02079 | nuclear factor of activated T-cells, cytoplasmic 2 | Nfatc2 | NaN | ACCTGGATGACGCAGCCACTTCAGAAAGCTGGGTTGGGACAGAAAGGTATATAGAGAGAAAATTTTGGAA | |
1 | 2 | 0.141225 | 1.3400 | 1.000000e+00 | 41.4 | 57.20 | 2 | NM_008154 | G-protein coupled receptor 3 | Gpr3 | NaN | CTGTACAATGCTCTCACTTACTACTCAGAGACAACGGTAACTCGGACTTATGTGATGCTGGCCTTGGTGT | |
2 | 3 | 0.182768 | 0.0519 | 4.330000e-04 | 5130.0 | 7810.00 | 3 | AK015719 | tropomodulin 2 | Tmod2 | NaN | CACCAGGCTCAGTGCCTAGTATCGGCTTCACCTAGTGTGGTTACTCAGGGCACGCAGAGCTACAGAACAC | |
3 | 4 | -0.393227 | 0.0608 | 1.020000e-10 | 4650.0 | 1880.00 | 4 | AK003367 | mitochondrial ribosomal protein L15 | Mrpl15 | NaN | CAAGAAGTCTAGAAATTCTGTGCAAGCCTATTCCATTCTTTCTGCGGGGACAACCAATTCCGAAAAGAAT | |
4 | 5 | -0.986599 | 0.1050 | 6.320000e-21 | 2910.0 | 301.00 | 5 | BC003333 | RIKEN cDNA 0610033I05 gene | 0610033I05Rik | NaN | AGAACTGGGTGGCAGATATCCTAGAGTTTTGACCAACGTTCACAGCACACATATTGATCTTATAGGACCT | |
5 | 6 | 0.023881 | 0.1020 | 8.150000e-01 | 708.0 | 748.00 | 6 | NM_008462 | killer cell lectin-like receptor, subfamily A, member 2 | Klra2 | NaN | TGAATTGAAGTTCCTTAAATCCCAACTTCAAAGAAACACATACTGGATTTCACTGACACATCATAAAAGC | |
6 | 7 | -1.484182 | 0.1250 | 1.420000e-32 | 10200.0 | 336.00 | 7 | NM_008029 | FMS-like tyrosine kinase 4 | Flt4 | NaN | GAGGTGCTGTGGGATGACCGCCGGGGCATGCGGGTGCCCACTCAACTGTTGCGCGATGCCCTGTACCTGC | |
7 | 8 | -1.826136 | 0.4150 | 1.100000e-05 | 719.0 | 10.70 | 8 | NM_054088 | adiponutrin | Adpn | NaN | GTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTCCTGCTTCATTCCCCTCTTCTCT | |
8 | 9 | -1.034478 | 1.7800 | 1.000000e+00 | 96.2 | 8.89 | 9 | NM_009750 | nerve growth factor receptor (TNFRSF16) associated protein 1 | Ngfrap1 | NaN | TACAGCTGAGAAATTGTCTACGCATCCTTATGGGGGAGCTGTCTAACCACCACGATCACCATGATGAATT | |
9 | 10 | 0.240589 | 0.3090 | 4.360000e-01 | 161.0 | 280.00 | 10 | AB045323 | DNA segment, Chr 8, ERATO Doi 594, expressed | D8Ertd594e | NaN | GATTCAGACTCGGGAGGAGCATCCCAACCTCTCCTTGAGGATAAAGGCCTGAGCGATTGCCCTGGGGAGC | |
10 | 11 | 0.320937 | 0.3590 | 3.710000e-01 | 125.0 | 261.00 | 11 | AK005789 | dynein, cytoplasmic, light chain 2B | Dncl2b | NaN | TGCAGAAGGCATTCCAATCCGAACAACCCTGGACAACTCCACAACGGTTCAGTATGCGGGTCTTCTCCAC | |
11 | 12 | 0.358304 | 2.0600 | 1.000000e+00 | 20.4 | 46.60 | 12 | NM_010517 | insulin-like growth factor binding protein 4 | Igfbp4 | NaN | GGAGAAGCTGGCGCGCTGCCGCCCCCCCGTGGGTTGCGAGGAGTTGGTGCGGGAGCCAGGCTGCGGTTGT | |
12 | 13 | -0.012207 | 0.3640 | 9.730000e-01 | 184.0 | 179.00 | 13 | AK010722 | RIKEN cDNA 2410075D05 gene | 2410075D05Rik | NaN | GGAGCATCTGGAGTTCCGCTTACCGGAAATAAAGTCTTTACTATCGGTGATTGGAGGGCAGTTCACTAAC | |
13 | 14 | -1.548040 | 0.1300 | 7.210000e-33 | 10200.0 | 290.00 | 14 | AK003755 | DNA segment, Chr 4, ERATO Doi 421, expressed | D4Ertd421e | NaN | AGCAAAGAGATCTCCCTCAGTGTGCCCATAGGTGGCGGTGCGAGCTTGCGGTTATTGGCCAGTGACTTGC | |
14 | 15 | 0.007342 | 0.2980 | 9.800000e-01 | 221.0 | 225.00 | 15 | BC003241 | cleavage stimulation factor, 3\' pre-RNA, subunit 3 | Cstf3 | NaN | AAATTAGAAGAAAATCCATATGACCTTGATGCTTGGAGCATTCTCATTCGAGAGGCACAGAATCAACCTA | |
15 | 16 | -0.226702 | 0.9440 | 8.100000e-01 | 89.0 | 52.80 | 16 | AK004937 | RIKEN cDNA 1300007O09 gene | 1300007O09Rik | NaN | CAGACACAAACCCTAGGTTGTATTGTAGACCGGAGTTTAAGCAGGCACTACCTGTCTGTCTTTTCTTCAT | |
16 | 17 | -0.148402 | 0.8010 | 8.530000e-01 | 96.5 | 68.60 | 17 | AK004524 | unnamed protein product; hypothetical SOCS domain | NaN | NaN | CGGAGCCCTGCGCGCCCAGAGCCCCCTCCCACCCGCTTCCACCAAGTGCATGGAGCCAACATCCGCATGG | |
17 | 18 | -0.612220 | 0.1280 | 1.690000e-06 | 1120.0 | 273.00 | 18 | NM_025999 | RIKEN cDNA 2610110L04 gene | 2610110L04Rik | NaN | TGCATTGATAAATGGAGTGATCGACACAGGAACTGCCCCATTTGTCGCCTACAGATGACTGGAGCAAATG | |
18 | 19 | 0.079690 | 0.0878 | 3.640000e-01 | 821.0 | 987.00 | 19 | NaN | NaN | NaN | -- CONTROL | NaN | |
19 | 20 | -0.084895 | 0.9380 | 9.280000e-01 | 76.8 | 63.20 | 20 | NM_023120 | guanine nucleotide binding protein (G protein), beta polypeptide 1-like | Gnb1l | NaN | ACCGCCTGGTCCCAGATTTGTCCTCCGAGGCACACAGTCGGCTGTGAACACGCTCCATTTCTGCCCACCA |
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