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Subset a BAM file by a number or fraction of mappings or reads
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| #!/bin/bash | |
| # | |
| # Subsample BAM to $SUBSAMPLE_MAPPINGS mappings (approximately) | |
| # | |
| # TODO: Make subsampling by number of reads, not mappings (a single read can be mapped multiple times so the final number | |
| # or "lines" will be different than the $SUBSAMPLE_READS) | |
| # check out https://www.biostars.org/p/9592303/#9593989 | |
| # |
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