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opplatek/fastq_names_seqs.sh

Created December 30, 2021 20:19
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Extract fastq sequence or names
Raw
fastq_names_seqs.sh
# Get all the sequences from fastq.gz
zcat in.fastq.gz | awk 'NR == 2 || NR % 4 == 2'
# Get all the sequence names from fastq.gz
zcat in.fastq.gz | awk 'NR == 1 || NR % 4 == 1'
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