Orhan Balci orhanbalci
orhanbalci
/ kubernetes_in_action.txt
Last active
February 14, 2020 05:05
Kubernetes in action commands
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| //list all namespaces in your cluster | |
| kubectl get ns | |
| //list posd in ns kube-system | |
| kubectl get po --namespace kube-system | |
| //one can use -n instead of --namespace | |
| //one can create a new namspace by using yaml | |
| apiVersion: v1 |
orhanbalci
/ bio_structure.rs
Created
November 29, 2019 14:20
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| use std::collections::HashMap; | |
| use nom::named; | |
| use nom::take_while; | |
| use nom::separated_list; | |
| use nom::take_str; | |
| use nom::take; | |
| use nom::is_space; | |
| use nom::types::CompleteByteSlice; | |
| use nom::types::CompleteStr; |
orhanbalci
/ last.rs
Last active
October 31, 2019 10:54
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| #![allow(unused)] | |
| extern crate nom; // 4.2.3 | |
| use nom::alpha1; | |
| use nom::alphanumeric; | |
| use nom::alt; | |
| use nom::digit1; | |
| use nom::do_parse; | |
| use nom::eol; | |
| use nom::flat_map; |
orhanbalci
/ pdb_token_ec_parser.rs
Created
September 23, 2019 14:01
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| named!( | |
| ec_value_parser<&[u8],Vec<String>>, | |
| separated_list!( | |
| tag!(","), | |
| map_res!( | |
| map_res!( | |
| take_while!(|c : u8| {c == b'.' || is_digit(c) || is_space(c)} | |
| ), str::from_utf8) |
orhanbalci
/ pdb_token_synonym_parser.rs
Created
September 23, 2019 12:58
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| named!( | |
| synonym_parser<TokenLine>, | |
| do_parse!( | |
| tag!("COMPND") | |
| >> space1 | |
| >> cont: opt!(integer) | |
| >> space0 | |
| >> tag!("SYNONYM") | |
| >> tag!(":") | |
| >> space1 |
orhanbalci
/ pdb_token_chain_parser.rs
Created
September 23, 2019 08:12
Parses PDB file COMPND record CHAIN tokens
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| named!( | |
| chain_value_parser<&[u8],Vec<String>>, | |
| separated_list!(tag!(","), alphanum_word_with_spaces_inside) | |
| ); | |
| named!( | |
| chain_parser<TokenLine>, | |
| do_parse!( |
orhanbalci
/ pdb_token_molecule_parser.rs
Last active
September 23, 2019 09:17
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| named!( | |
| molecule_name_parser<String>, | |
| map_res!(map_res!(take_until!(";"), str::from_utf8), str::FromStr::from_str) | |
| ); | |
| named!( | |
| molecule_parser<TokenLine>, | |
| do_parse!( | |
| tag!("COMPND") |
orhanbalci
/ pdb_token_molecule_id_parser.rs
Created
September 23, 2019 07:23
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| named!( | |
| mol_id_parser<Token>, | |
| do_parse!( | |
| tag!("COMPND") | |
| >> take!(2) | |
| >> cont: opt!(twodigit_integer) | |
| >> space0 | |
| >> tag!("MOL_ID") | |
| >> tag!(":") | |
| >> space1 |
orhanbalci
/ pdb_token_enum.rs
Created
September 20, 2019 13:42
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| #[derive(Debug)] | |
| enum Token { | |
| MoleculeId(i32), | |
| Molecule(String), | |
| Chain { identifiers: Vec<String> }, | |
| Fragment(String), | |
| Synonym { synonyms: Vec<String> }, | |
| Ec { commission_numbers: Vec<String> }, | |
| Engineered(bool), |
orhanbalci
/ pdb_ceveat_line_parser.rs
Last active
September 20, 2019 13:13
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| #[derive(Debug)] | |
| struct Caveat { | |
| continuation: u32, | |
| comment: String, | |
| } | |
| named!( | |
| caveat_parser<Caveat>, | |
| do_parse!( |
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