pafonta

# For an example of use, see https://gist.github.com/pafonta/21f3db4d9c31f6a1c2f7ede8cbf3406b#gistcomment-3970844.

"""Entity Linking - Link mentions from texts to terms in ontologies.

Use character-based embedding to handle plurals, misspellings, partial matches, ...
"""

import pickle

import faiss

pafonta

# For an example of use, see https://gist.github.com/pafonta/37762f56e8c1879569bca64901d0a000#gistcomment-3968062.

"""Collect statistics on PubMed articles."""

from __future__ import annotations

from pathlib import Path

from defusedxml import ElementTree
from tqdm import tqdm

pafonta

# For an example of use, see https://gist.github.com/pafonta/d33a0d5d849932f8ceab8b711d995497#gistcomment-3965575.

"""Find MeSH terms in the MeSH tree simply (i.e. without using a graph)."""

from __future__ import annotations

import json
from collections.abc import Iterator
from xml.etree.ElementTree import Element  # nosec

pafonta

# For an example of use, see https://gist.github.com/pafonta/162c1b9ec0380e95a017297a707a4d66#gistcomment-3935739.

"""Find & Rank MeSH terms associated with an author."""

from __future__ import annotations

import json
from collections import Counter
from collections.abc import Iterator
from xml.etree.ElementTree import Element  # nosec

pafonta

pafonta

#!/usr/bin/env python3.7

import asyncio
from asyncio import Task

from aiohttp import ClientResponseError, ClientSession


# TODO Concrete example to be generalized.

pafonta

pafonta