paleolimbot

Homebrew build logs for gdal on macOS 12
Build date: 2022-11-09 14:53:50

paleolimbot

FROM rocker/r-devel:latest
RUN apt update && apt install -y git flex
RUN git clone git://gcc.gnu.org/git/gcc.git gcc11
RUN cd gcc11 && ./contrib/download_prerequisites 
RUN mkdir gcc-build && cd gcc-build && ../gcc11/configure -disable-multilib --enable-languages=c,c++,fortran
RUN cd gcc-build && make -j4 && make install

RUN echo 'LD_LIBRARY_PATH="/usr/local/lib64:${R_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}"' >> /usr/lib/R/etc/ldpaths
RUN mkdir ~/.R && echo 'CXX11=/usr/local/bin/g++' > ~/.R/Makevars && echo 'CXX=/usr/local/bin/g++' >> ~/.R/Makevars && echo 'CC=/usr/local/bin/gcc' >> ~/.R/Makevars

paleolimbot

library(tidyverse)
library(argodata) # remotes::install_github("paleolimbot/argodata")
argodata:::use_dev_cache()

urls <- argo_global_prof() %>% 
  head(100) %>% 
  argo_url()

dir <- tempfile()
dir.create(dir)

paleolimbot

stream_file <- "~/Dropbox/delineatens/dem/streams.shp"

# full read by OGR/sf
system.time(streams_sf <- sf::read_sf(stream_file))

# feature-level summaries by OGR/vapour
system.time(
  stream_ext_vapour <- 
    vapour::vapour_read_extent(dirname(stream_file), layer = "streams")
)

paleolimbot

FROM rocker/r-ubuntu:18.04

# RStudio Package Manager cache of June 3, 2020
ENV RSPM https://packagemanager.rstudio.com/all/__linux__/bionic/290

# system dependencies for R packages
RUN apt-get update && apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev

# install R package dependencies
RUN Rscript -e "install.packages('remotes')"

paleolimbot

poly_df <- read.csv(
  url("https://gist.github.com/will-r-chase/ac1c1b3ba96a761a7d8d70af860bf663/raw/97c68537ad35254721ed55b12b696af6e424cd4d/overlapping_polys.csv")
)

# geos approach
poly_geos <- geos::geos_make_polygon(
  poly_df$x, poly_df$y, 
  feature_id = poly_df$id
)

paleolimbot

## Emacs, make this -*- mode: sh; -*-

## start with the Docker 'base R' Debian-based image
FROM r-base:latest

## This handle reaches Carl and Dirk
MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com

## Remain current
RUN apt-get update -qq \

paleolimbot

library(sf)
library(geos)

states <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_1_sf.rds"))
counties <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_2_sf.rds"))

states_sfc <- states$geometry %>% st_set_crs(NA)
states_wkb <- st_as_binary(states_sfc)
states_geos <- geos_read_wkb(states_wkb)

paleolimbot

# loading in this order causes sf to crash if libgeos links to system GEOS
# remotes::install_github("paleolimbot/libgeos", configure.vars = "USE_SYSTEM_GEOS=YES")
library(libgeos)
library(sf)

nc <- read_sf(system.file("shape/nc.shp", package = "sf"))
nc1 <- nc[1, , drop = FALSE]
st_intersects(nc, nc1)

paleolimbot

library(dplyr)
library(sf)
library(s2) # remotes::install_github("r-spatial/s2")

counties_sf <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_2_sf.rds")) %>% 
  select(state = NAME_1, county = NAME_2) %>% 
  # USA atlas projection
  st_transform(2163)

counties_s2 <- counties_sf %>%