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require 'csv'
require 'faraday'
require 'faraday_middleware'
require 'pry'

# Process DOIs from Altmetrics CSV file
altmetric_csv_file = 'Altmetric - Mentions - University of York - 2019-04-16.csv'

# Store all processed unpaywall responses in new csv file
unpaywall_csv_file = 'Unpaywall_York.csv'

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ERROR 06:25:50.697 (RepositoryNodeTypeManager) Node types were read from the system content, and appear to be inconsistent or invalid: repo
org.modeshape.jcr.value.ValueFormatException: Error converting "ns010:OriginalFile" from String to a Name
        at org.modeshape.jcr.value.basic.NameValueFactory.create(NameValueFactory.java:157)
        at org.modeshape.jcr.value.basic.NameValueFactory.create(NameValueFactory.java:46)
        at org.modeshape.jcr.cache.document.DocumentTranslator.childReferenceFrom(DocumentTranslator.java:966)
        at org.modeshape.jcr.cache.document.ImmutableChildReferences$Medium.<init>(ImmutableChildReferences.java:220)
        at org.modeshape.jcr.cache.document.ImmutableChildReferences.create(ImmutableChildReferences.java:53)
        at org.modeshape.jcr.cache.document.DocumentTranslator.getChildReferences(DocumentTranslator.java:887)
        at org.modeshape.jcr.cache.document.LazyCachedNode.getChildReferences(LazyCachedNode.java:449)
        at org.modeshape.jcr.SystemContent

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    /**
     * Generic connector to route to create initiate Orcid Auth process. 
     * While we are only using the app to read data (in the intial phase)
     * we need all the scopes: /read-limited, /activities/update and /person/update.
     *
     * @return redirect to authorization URL
     */
    public function connect()
    {
        $this->oauth->setClientId(config('orcid.client_id'))

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tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

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Libraries

• 960 Grid System - An effort to streamline web development workflow by providing commonly used dimensions, based on a width of 960 pixels. There are two variants: 12 and 16 columns, which can be used separately or in tandem.
• Compass - Open source CSS Authoring Framework.
• Bootstrap - Sleek, intuitive, and powerful mobile first front-end framework for faster and easier web development.
• Font Awesome - The iconic font designed for Bootstrap.
• Zurb Foundation - Framework for writing responsive web sites.
• SASS - CSS extension language which allows variables, mixins and rules nesting.
• Skeleton - Boilerplate for responsive, mobile-friendly development.

Guides

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Gems

• Bundler - Bundler maintains a consistent environment for ruby applications. It tracks an application's code and the rubygems it needs to run, so that an application will always have the exact gems (and versions) that it needs to run.
• rabl - General ruby templating with json, bson, xml, plist and msgpack support
• Thin - Very fast and lightweight Ruby web server
• Unicorn - Unicorn is an HTTP server for Rack applications designed to only serve fast clients on low-latency, high-bandwidth connections and take advantage of features in Unix/Unix-like kernels.
• SimpleCov - SimpleCov is a code coverage analysis tool for Ruby 1.9.
• Zeus - Zeus preloads your Rails app so that your normal development tasks such as console, server, generate, and specs/tests take less than one second.
• [factory_girl](h

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Libraries

• jQuery - The de-facto library for the modern age. It makes things like HTML document traversal and manipulation, event handling, animation, and Ajax much simpler with an easy-to-use API that works across a multitude of browsers.
• Backbone - Backbone.js gives structure to web applications by providing models with key-value binding and custom events, collections with a rich API of enumerable functions, views with declarative event handling, and connects it all to your existing API over a RESTful JSON interface.
• AngularJS - Conventions based MVC framework for HTML5 apps.
• Underscore - Underscore is a utility-belt library for JavaScript that provides a lot of the functional programming support that you would expect in Prototype.js (or Ruby), but without extending any of the built-in JavaScript objects.
• lawnchair - Key/value store adapter for indexdb, localStorage

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# Register DOI metadata first,  pass metadata as external @file
curl -v -i --basic -u 'BL.USER:PASSXXX' \
--header 'Content-Type:application/xml;charset=UTF-8' \
--data-binary @datacite-example-full-v3.1.xml \
--request POST https://test.datacite.org/mds/metadata

# Register DOI with its landing page, pass parameters in external via @file
curl -v -i --basic -u 'BL.USER:PASXXX' \
--header 'Content-Type:text/plain;charset=UTF-8' \
--data-binary @example-full-du-test.doi \

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require 'httparty'
# Based on 

class Datacite
  include HTTParty
  base_uri 'https://test.datacite.org'
  # PRODUCTION # base_uri 'https://mds.datacite.org'

  def initialize
    @auth = {:username => Rails.application.secrets.mduser, :password => Rails.application.secrets.mdpassword}

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[vagrant@vagrant-centos70 af-tutorial]$ rails console
Loading development environment (Rails 4.1.8)
irb(main):001:0> class DublinCoreAsset < ActiveFedora::Rdf::Resource
irb(main):002:1> property :title, predicate: RDF::DC.title
irb(main):003:1> end
TypeError: superclass must be a Class (ActiveSupport::Deprecation::DeprecatedConstantProxy given)
	from (irb):1
	from /home/vagrant/.rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/gems/railties-4.1.8/lib/rails/commands/console.rb:90:in `start'
	from /home/vagrant/.rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/gems/railties-4.1.8/lib/rails/commands/console.rb:9:in `start'
	from /home/vagrant/.rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/gems/railties-4.1.8/lib/rails/commands/commands_tasks.rb:69:in `console'