AMICO installation instruction for windows x64:

README.md

AMICO installation instruction for windows x64:

• conda create -n py27 python=2.7
• activate py27
• conda install -c intel mkl
• conda install numpy scipy six
• pip install nibabel
• conda install -c conda-forge dipy
• pip install https://github.com/samuelstjean/spams-python/releases/download/v2.6/spams-2.4-cp27-none-win_amd64.whl
• pip install git+https://github.com/daducci/AMICO.git
• pip install -U nibabel
• locate spams.py in the conda environment py27:
  • update line 424 in spams.py: from if D == None: to if D is None:

demo instruction:

• download example dataset https://github.com/daducci/AMICO/blob/master/doc/demos/NODDI_01.md
• move above data to c:\Temp and follow the folder structure from above link
• copy test_amico.py to c:\Temp
• make sure conda environment py27 is activated
• run python test_amico.py

I know they broke a bunch of stuff in numpy 1.10.x with the fortran ordering, but the old spams .so file is pretty much the same, I guess I can try hand editing the wheel file myself instead. Weird I had no comment reply notice or anything about this gist though.

There goes, I updated the wheel while with all the none checking changed, still passes all the tests on numpy 1.13.1.
It still the old version 2.4 and for python 2.7, but at least people won't need hand editing like in your last step from now on.