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pansapiens/Dockerfile

Created March 23, 2021 04:26
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rnasik in docker (via conda/mamba)
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Dockerfile
FROM continuumio/miniconda3
#
# docker build -t pansapiens/rnasik:latest -t pansapiens/rnasik:1.5.4 .
# docker run --rm -it -v $(pwd):/data pansapiens/rnasik --help
#
RUN conda install --yes -c conda-forge mamba
RUN mamba install --yes -c bioconda -c conda-forge -c serine -c serine/label/dev -c anaconda -c defaults -c r -c conda-forge/label/broken \
python=3.6 rnasik=1.5.4 qualimap=2.2.2b=0 "pandas<1" && \
mamba clean -af --yes
ENTRYPOINT ["RNAsik"]
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https://github.com/mamba-org/micromamba-docker is a good alternative base image.

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