Singularity recipe for a https://github.com/costasilvati/consexpression image

Singularity

# Build like: $ sudo singularity build --writable consexpression.simg Singularity
# Run like: $ singularity run --bind CONFIG_tool.txt:/consexpression/dao/CONFIG_tool.txt consexpression.simg

Bootstrap: docker
From: ubuntu:17.10

# Bootstrap: debootstrap
# OSVersion: xenial
# MirrorURL: http://au.archive.ubuntu.com/ubuntu/

%help
https://github.com/costasilvati/consexpression

%post
    apt-get -y update
    apt-get -y install software-properties-common
    apt-add-repository -y universe
    apt-add-repository -y multiverse
    add-apt-repository -y ppa:marutter/rrutter
    apt-get -y update
    apt-get -y install build-essential git python3 python3-pip bowtie2 tophat r-base
    git clone https://github.com/costasilvati/consexpression.git
    pip3 install -U pip
    pip3 install -U rpy2

%labels
Maintainer Nobody
Version v1.0

%runscript

cd /conexpression
python3 experiment.py dao/CONFIG_tool.txt