Andrew Perry pansapiens

## install_docker.sh
#!/usr/bin/env bash
UBUNTU_RELEASE=$(lsb_release --codename --short)
export COMPOSE_VERSION=1.8.0

# Ask for the user password
# Script only works if sudo caches the password for a few minutes
sudo true

sudo apt-get update
sudo apt-get install python-pip apt-transport-https ca-certificates

## filter_counts.py
#!/usr/bin/env python
import sys
import os
import argparse
import pandas as pd
import gffutils


def create_featuredb(gtf_file, output_file=':memory:'):
    """

## make_tiled_composite_video.py
#!/usr/bin/env python
"""
Given a list of video files, creates a tiled output video with each
input video playing simulutaneously with mixed audio.
The result is something like a composite security camera feed, or the
"Brady Bunch" opening credits.

DISCLAIMER: The author holds no responsibility for your actions if you
become criminally insane from watching all nine Puppet Master films
simultaneously. You have been warned.

## Dockerfile
############################################################
# Dockerfile to build bcl2fastq container images
# Based on CentOS images made by fatherlinux
# fatherlinux is a RedHat developer
# http://developerblog.redhat.com/2014/05/15/practical-introduction-to-docker-containers/
# Fork from version by: Cyril Firmo <firmo@biologie.ens.fr>
############################################################
# Build:
# docker build -t bcl2fastq:2.19.0.316 -t bcl2fastq:2.19 -t bcl2fastq:latest .
#

## daves_bracket_challenge.py
friend = {'}':'{', ']':'[', ')':'('}
close = friend.keys()
open = friend.values()

def check(input):
    stack = []
    for c in input:
        if c in open:
            stack.append(c)
        elif c in close:

## hamming_paths.ipynb

      
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                pansapiens
                / hamming_paths.ipynb
            
            
              Last active
              March 19, 2017 00:37
            
              
                Dave & Bernie's Hamming Challenge
              
          
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## images2pdf.py
#!/usr/bin/env python
# Creates a PDF from a set of images in a directory (one image per page, alphanumeric ordering).
#
# Usage:
# python images2pdf.py output_file.pdf
#
# Requires:
# pip install fpdf

from fpdf import FPDF

## build_mytardis_ubuntu_trusty.sh
#!/bin/bash
# For MyTardis 3.7 - YMMV for other versions

set USER=ubuntu
set MYTARDIS_ADMIN_NAME=admin
set MYTARDIS_ADMIN_EMAIL=spam+mytardis@pansapiens.com
set MYTARDIS_DATA_DIR=/data/mytardis
set SETUP_DYNAMIC_DNS=no
set CREATE_DATA_VOLUME=no

## lock_file.py
# Lightly modified from: https://gist.github.com/kjpgit/ceab4fc029c778dd1675bea8592e3bc1
# Useful to ensure two copies of a script aren't running concurrently (assuming they use
# the same lock file, trying to lock it twice will raise IOError).
import fcntl

def _lock_file_exclusively(path):
    """
    Open @path and lock it exlusively.
    Return: file object, which you must maintain a reference to
    (if it is closed, the lock is released).

## circular_permute_chain_email.py
import requests
from cashier import cache

"""
TO  ALL MY INTELLIGENT FRIENDS: WHAT DO THESE 7 WORDS HAVE IN COMMON?

I  am sending this only to my smart friends. I could not figure it out. See if  you can figure out what these seven words all have in  common

1.  Banana
2.  Dresser
	#!/usr/bin/env bash
	UBUNTU_RELEASE=$(lsb_release --codename --short)
	export COMPOSE_VERSION=1.8.0

	# Ask for the user password
	# Script only works if sudo caches the password for a few minutes
	sudo true

	sudo apt-get update
	sudo apt-get install python-pip apt-transport-https ca-certificates
	#!/usr/bin/env python
	import sys
	import os
	import argparse
	import pandas as pd
	import gffutils


	def create_featuredb(gtf_file, output_file=':memory:'):
	"""
	#!/usr/bin/env python
	"""
	Given a list of video files, creates a tiled output video with each
	input video playing simulutaneously with mixed audio.
	The result is something like a composite security camera feed, or the
	"Brady Bunch" opening credits.

	DISCLAIMER: The author holds no responsibility for your actions if you
	become criminally insane from watching all nine Puppet Master films
	simultaneously. You have been warned.
	############################################################
	# Dockerfile to build bcl2fastq container images
	# Based on CentOS images made by fatherlinux
	# fatherlinux is a RedHat developer
	# http://developerblog.redhat.com/2014/05/15/practical-introduction-to-docker-containers/
	# Fork from version by: Cyril Firmo <firmo@biologie.ens.fr>
	############################################################
	# Build:
	# docker build -t bcl2fastq:2.19.0.316 -t bcl2fastq:2.19 -t bcl2fastq:latest .
	#
	friend = {'}':'{', ']':'[', ')':'('}
	close = friend.keys()
	open = friend.values()

	def check(input):
	stack = []
	for c in input:
	if c in open:
	stack.append(c)
	elif c in close:
	#!/usr/bin/env python
	# Creates a PDF from a set of images in a directory (one image per page, alphanumeric ordering).
	#
	# Usage:
	# python images2pdf.py output_file.pdf
	#
	# Requires:
	# pip install fpdf

	from fpdf import FPDF
	#!/bin/bash
	# For MyTardis 3.7 - YMMV for other versions

	set USER=ubuntu
	set MYTARDIS_ADMIN_NAME=admin
	set MYTARDIS_ADMIN_EMAIL=spam+mytardis@pansapiens.com
	set MYTARDIS_DATA_DIR=/data/mytardis
	set SETUP_DYNAMIC_DNS=no
	set CREATE_DATA_VOLUME=no
	# Lightly modified from: https://gist.github.com/kjpgit/ceab4fc029c778dd1675bea8592e3bc1
	# Useful to ensure two copies of a script aren't running concurrently (assuming they use
	# the same lock file, trying to lock it twice will raise IOError).
	import fcntl

	def _lock_file_exclusively(path):
	"""
	Open @path and lock it exlusively.
	Return: file object, which you must maintain a reference to
	(if it is closed, the lock is released).
	import requests
	from cashier import cache

	"""
	TO ALL MY INTELLIGENT FRIENDS: WHAT DO THESE 7 WORDS HAVE IN COMMON?

	I am sending this only to my smart friends. I could not figure it out. See if you can figure out what these seven words all have in common

	1. Banana
	2. Dresser