Created
May 8, 2022 21:55
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Valid SBML failing in convert(ODESystem, rs)
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<?xml version="1.0" encoding="UTF-8"?> | |
<!-- Created by COPASI version 4.27 (Build 217) on 2022-05-08 22:12 with libSBML version 5.18.0. --> | |
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4"> | |
<model metaid="COPASI0" id="New_Model" name="New Model"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI0"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:10:40Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
<listOfUnitDefinitions> | |
<unitDefinition id="volume" name="volume"> | |
<listOfUnits> | |
<unit kind="litre" exponent="1" scale="-3" multiplier="1"/> | |
</listOfUnits> | |
</unitDefinition> | |
<unitDefinition id="substance" name="substance"> | |
<listOfUnits> | |
<unit kind="mole" exponent="1" scale="-3" multiplier="1"/> | |
</listOfUnits> | |
</unitDefinition> | |
</listOfUnitDefinitions> | |
<listOfCompartments> | |
<compartment metaid="COPASI1" id="compartment" name="compartment" spatialDimensions="3" size="1" constant="true"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI1"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:11:10Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
</compartment> | |
</listOfCompartments> | |
<listOfSpecies> | |
<species metaid="COPASI2" id="A" name="A" compartment="compartment" initialConcentration="3" boundaryCondition="true" constant="false"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI2"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:11:10Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
</species> | |
<species metaid="COPASI3" id="B" name="B" compartment="compartment" initialConcentration="7" boundaryCondition="true" constant="false"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI3"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:11:12Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
</species> | |
<species metaid="COPASI4" id="C" name="C" compartment="compartment" initialConcentration="1" boundaryCondition="false" constant="false"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI4"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:12:27Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
</species> | |
</listOfSpecies> | |
<listOfRules> | |
<assignmentRule variable="A"> | |
<math xmlns="http://www.w3.org/1998/Math/MathML"> | |
<apply> | |
<plus/> | |
<cn> 1 </cn> | |
<ci> B </ci> | |
</apply> | |
</math> | |
</assignmentRule> | |
</listOfRules> | |
<listOfReactions> | |
<reaction metaid="COPASI5" id="reaction" name="reaction" reversible="false"> | |
<annotation> | |
<COPASI xmlns="http://www.copasi.org/static/sbml"> | |
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> | |
<rdf:Description rdf:about="#COPASI5"> | |
<dcterms:created> | |
<rdf:Description> | |
<dcterms:W3CDTF>2022-05-08T21:12:18Z</dcterms:W3CDTF> | |
</rdf:Description> | |
</dcterms:created> | |
</rdf:Description> | |
</rdf:RDF> | |
</COPASI> | |
</annotation> | |
<listOfReactants> | |
<speciesReference species="C" stoichiometry="1"/> | |
</listOfReactants> | |
<kineticLaw> | |
<math xmlns="http://www.w3.org/1998/Math/MathML"> | |
<apply> | |
<times/> | |
<ci> compartment </ci> | |
<ci> k1 </ci> | |
<ci> C </ci> | |
</apply> | |
</math> | |
<listOfParameters> | |
<parameter id="k1" name="k1" value="0.1"/> | |
</listOfParameters> | |
</kineticLaw> | |
</reaction> | |
</listOfReactions> | |
</model> | |
</sbml> |
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