paulgribble

import os, time, sys, json
import numpy as np
import torch as th
import matplotlib.pyplot as plt
import motornet as mn

def main_fcn(USE_DUMMY_FUN):

    print(f"\nUSE_DUMMY_FUN = {USE_DUMMY_FUN}\n")

paulgribble

# %%
import os
import time
import sys
import json
import numpy as np
import torch as th
import matplotlib.pyplot as plt
import motornet as mn

paulgribble

import pkg_resources
from subprocess import call

packages = [dist.project_name for dist in pkg_resources.working_set]
call("pip install --upgrade " + ' '.join(packages), shell=True)

paulgribble

html {
    font-family: verdana, sans-serif;
    font-weight: 400;
    font-size: 10pt;
    height: 100%;
    width: 100%;
    margin: 0;
    padding: 0;
    min-width: 800px;
    max-width: 800px;

paulgribble

x = 1:50;
figure
subplot(1,2,1)
hold on
plot(x, randn(size(x)),'bs-')
plot(x,sin(x),'r+-')
set(gca,'ylim',[-3 3])
plot(x,repmat(1,size(x,2)),'r-','linewidth',2)
plot(x,repmat(-1,size(x,2)),'r-','linewidth',2)
subplot(1,2,2)

paulgribble

matlab2014a retina mac blurry?
(1) cd /Applications/MATLAB_R2014a.app/sys/java/jre/maci64
(2) mv jre jre.orig
(3) ln -s '/Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home' jre

paulgribble

Getting afni working on Mac OSX 10.9 Mavericks, using Homebrew

Briefly: parts of afni (e.g. uber_subject.py) require the pyqt library ... and pyqt requires qt ... but the homebrew install of qt is currently broken on osx mavericks 10.9 ... but there is a patch ... but pyqt also requires sip ... and there is a problem where pyqt doesn't like the version of sip, in particular with a newer haswell CPU macbook pro ... but there is a fix ... and we need to add lines to our .bash_profile for afni ... and be careful if you have other python things installed since afni expects to find python things in certain locations

Here is a step-by-step:

1.	install Xcode command line tools
	
	xcode-select --install

paulgribble

{
 "metadata": {
  "name": ""
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

paulgribble

{
 "metadata": {
  "name": "torqueModel"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

paulgribble

#!/bin/sh

# LaTeX
echo "installing LaTeX"
sudo apt-get -qq install texlive-full texlive-fonts-extra cm-super texlive-latex-extra auctex
sudo texconfig paper letter
wget http://www.tug.org/fonts/getnonfreefonts/install-getnonfreefonts
chmod +x install-getnonfreefonts
sudo ./install-getnonfreefonts
sudo getnonfreefonts garamond