package installations.R

install.packages('caret')
install.packages('ccd')
install.packages('d3Network')
install.packages('data.table')
install.packages('dplyr')
install.packages('DMwR')
install.packages('e1071')
install.packages('ergm')
install.packages('ff')
install.packages('foreach')
install.packages('FNN')
install.packages('glmnet')
install.packages('ggmap')
install.packages('ggplot2')
install.packages('Hmisc')
install.packages('HMM')
install.packages('igraph')
install.packages('Imap')
install.packages('installr')
install.packages('irlba')
install.packages('lubridate')
install.packages('magrittr')
install.packages('MCMCpack')
install.packages('plyr')
install.packages('randomForest')
install.packages('RecordLinkage')
install.packages('reshape')
install.packages('RSQLite')
install.packages('rvest')
install.packages('shiny')
install.packages('sqldf')
install.packages('tidyr')
install.packages('tsne')
install.packages('XML')

# should probably install winbugs before this one
install.packages('R2WinBUGS')

install.packages('devtools')
library('devtools')
install_github('rCharts', 'ramnathv')
install_github('slidify', 'ramnathv')

# let's go crazy and install rMaps
#install_github('ramnathv/rCharts@dev') # this errored out
install_github('ramnathv/rMaps')
# rMaps may be a bit wonky. The github repo says it has some requirements in the
# rCharts development repo, which I don't think installed correctly. rMaps hadn't
# been updated in 4 months when I installed, so maybe it's a moot issue right now?
# Probably not, rCharts hasn't seen a ton of updates in the interim either.
# rMaps seems to at least work *ok*

Sys.setenv(MAKEFLAGS = "-j4") # Set number of cores (here 4) to devote to the build
source('http://mc-stan.org/rstan/install.R', echo = TRUE, max.deparse.length = 2000)
install_rstan()