Install these packages after creating a new R installation

install.R

renv::install("BiocManager", prompt = FALSE)
renv::install("languageserver", prompt = FALSE)
renv::install("tidyverse", prompt = FALSE)
renv::install("xaringan", prompt = FALSE)
renv::install("targets", prompt = FALSE)
renv::install("visNetwork", prompt = FALSE)
renv::install("httpgd", prompt = FALSE)
renv::install("patchwork", prompt = FALSE)
renv::install("devtools", prompt = FALSE)
renv::install("roxygen2", prompt = FALSE)
renv::install("ggrepel", prompt = FALSE)
renv::install("plotly", prompt = FALSE)
renv::install("flexdashboard", prompt = FALSE)
renv::install("DT", prompt = FALSE)
renv::install("knitr", prompt = FALSE)
renv::install("tidylog", prompt = FALSE)
renv::install("tidytext", prompt = FALSE)
# GitHub
options(repos = BiocManager::repositories())
renv::install("paulklemm/rvisidata", prompt = FALSE)
renv::install("paulklemm/rmyknife", prompt = FALSE)
renv::install("paulklemm/mygo", prompt = FALSE)
renv::install("paulklemm/dereportr", prompt = FALSE)
renv::install("paulklemm/trapdiff", prompt = FALSE)
renv::install("krassowski/complex-upset", prompt = FALSE)
# Lukas
renv::install("shiny", prompt = FALSE)
renv::install("shinydashboard", prompt = FALSE)
renv::install("shinyWidgets", prompt = FALSE)
renv::install("shinyhelper", prompt = FALSE)
renv::install("shinyFiles", prompt = FALSE)
renv::install("shinybusy", prompt = FALSE)
renv::install("mojaveazure/seurat-disk", prompt = FALSE)
renv::install("proxyC", prompt = FALSE)
# mapscvi has problems because of LFS.
renv::install("/beegfs/scratch/bruening_scratch/pklemm/rpackages/mapscvi", prompt = FALSE)
# With Pat
enterprise_github_host <- "github.sf.mpg.de/api/v3"
# devtools::install_github("lsteuernagel/mapscvi", host = enterprise_github_host)
devtools::install_github(repo = "bruening-lab/corinna.trap.datasets", host = enterprise_github_host)
devtools::install_github(repo = "lsteuernagel/scUtils", host = enterprise_github_host)
devtools::install_github(repo = "lsteuernagel/fibeR", host = enterprise_github_host)