pb-cdunn

#[****************************************************************
  * Arturo
  *
  * Programming Language + Interpreter
  * (c) 2019 Yanis Zafirópulos (aka Dr.Kameleon)
  *
  * @file: compiler.nim
  *****************************************************************]#

import algorithm, math, os, parseutils, sequtils, strutils, tables

pb-cdunn

PacBio::BAM::DataSet input;
std::vector<std::string> result;
for (const auto& bamFile : input.BamFiles())
{
    std::string outFn = "...";

    PacBio::BAM::SubreadSet s{bamFile};
    s.Filters(input.Filters());
    s.Save(outFn);
    

pb-cdunn

This is my file.

pb-cdunn

# vim: sw=2 ts=2 sts=2 tw=80 et:
from strutils import repeat, `%`

proc log*(msgs: varargs[string]) =
  for s in msgs:
    write(stderr, s)
  write(stderr, '\L')
  return
proc scan_i() =
  const N = 31

pb-cdunn

import multiprocessing as M
import Queue
import time, sys

def go(x):
    print 'hi-%s'%repr(x)
    i = 0
    while True:
        q.put('Q'*(1<<20))
        #q.put('put-%s-%d' %(x, i))

pb-cdunn

project         := pbdagcon
sha             := 70b4ecfa5b0ded0b0d2454c1d46895f618c82a02
github_root_uri := https://github.com/Pacificbiosciences
src_clone_uri   := ${github_root_uri}/${project}.git

build: | project-clone
	cd project-clone; ${MAKE} project
project-clone:
	git checkout --depth=0 ${src_clone_uri} $@