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job_cores error Galaxy
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| galaxy.tools ERROR 2019-10-31 17:12:51,776 [p:3704,w:0,m:3] [WorkflowRequestMonitor.monitor_thread] Exception caught while attempting tool execution: | |
| Traceback (most recent call last): | |
| File "lib/galaxy/tools/__init__.py", line 1491, in handle_single_execution | |
| collection_info=collection_info, | |
| File "lib/galaxy/tools/__init__.py", line 1573, in execute | |
| return self.tool_action.execute(self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs) | |
| File "lib/galaxy/tools/actions/__init__.py", line 289, in execute | |
| history, inp_data, inp_dataset_collections, preserved_tags, all_permissions = self._collect_inputs(tool, trans, incoming, history, current_user_roles, collection_info) | |
| File "lib/galaxy/tools/actions/__init__.py", line 256, in _collect_inputs | |
| inp_data, all_permissions = self._collect_input_datasets(tool, incoming, trans, history=history, current_user_roles=current_user_roles, collection_info=collection_info) | |
| File "lib/galaxy/tools/actions/__init__.py", line 199, in _collect_input_datasets | |
| tool.visit_inputs(param_values, visitor) | |
| File "lib/galaxy/tools/__init__.py", line 1380, in visit_inputs | |
| visit_input_values(self.inputs, values, callback) | |
| File "lib/galaxy/tools/parameters/__init__.py", line 154, in visit_input_values | |
| visit_input_values(input.inputs, d, callback, new_name_prefix, new_label_prefix, parent_prefix=new_name_prefix, **payload) | |
| File "lib/galaxy/tools/parameters/__init__.py", line 168, in visit_input_values | |
| callback_helper(input, input_values, name_prefix, label_prefix, parent_prefix=parent_prefix, context=context) | |
| File "lib/galaxy/tools/parameters/__init__.py", line 131, in callback_helper | |
| new_value = callback(**args) | |
| File "lib/galaxy/tools/actions/__init__.py", line 117, in visitor | |
| processed_dataset = process_dataset(v) | |
| File "lib/galaxy/tools/actions/__init__.py", line 93, in process_dataset | |
| data = data.get_converted_dataset(trans, target_ext, target_context=parent, history=history) | |
| File "lib/galaxy/model/__init__.py", line 2629, in get_converted_dataset | |
| new_dataset = next(iter(self.datatype.convert_dataset(trans, self, target_ext, return_output=True, visible=False, deps=deps, target_context=target_context, history=history).values())) | |
| File "lib/galaxy/datatypes/data.py", line 622, in convert_dataset | |
| converted_dataset = converter.execute(trans, incoming=params, set_output_hid=visible, history=history)[1] | |
| File "lib/galaxy/tools/__init__.py", line 1573, in execute | |
| return self.tool_action.execute(self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs) | |
| File "lib/galaxy/tools/actions/__init__.py", line 289, in execute | |
| history, inp_data, inp_dataset_collections, preserved_tags, all_permissions = self._collect_inputs(tool, trans, incoming, history, current_user_roles, collection_info) | |
| File "lib/galaxy/tools/actions/__init__.py", line 256, in _collect_inputs | |
| inp_data, all_permissions = self._collect_input_datasets(tool, incoming, trans, history=history, current_user_roles=current_user_roles, collection_info=collection_info) | |
| File "lib/galaxy/tools/actions/__init__.py", line 199, in _collect_input_datasets | |
| tool.visit_inputs(param_values, visitor) | |
| File "lib/galaxy/tools/__init__.py", line 1380, in visit_inputs | |
| visit_input_values(self.inputs, values, callback) | |
| File "lib/galaxy/tools/parameters/__init__.py", line 168, in visit_input_values | |
| callback_helper(input, input_values, name_prefix, label_prefix, parent_prefix=parent_prefix, context=context) | |
| File "lib/galaxy/tools/parameters/__init__.py", line 131, in callback_helper | |
| new_value = callback(**args) | |
| File "lib/galaxy/tools/actions/__init__.py", line 141, in visitor | |
| input_datasets[prefix + input.name] = process_dataset(value) | |
| File "lib/galaxy/tools/actions/__init__.py", line 93, in process_dataset | |
| data = data.get_converted_dataset(trans, target_ext, target_context=parent, history=history) | |
| File "lib/galaxy/model/__init__.py", line 2629, in get_converted_dataset | |
| new_dataset = next(iter(self.datatype.convert_dataset(trans, self, target_ext, return_output=True, visible=False, deps=deps, target_context=target_context, history=history).values())) | |
| File "lib/galaxy/datatypes/data.py", line 622, in convert_dataset | |
| converted_dataset = converter.execute(trans, incoming=params, set_output_hid=visible, history=history)[1] | |
| File "lib/galaxy/tools/__init__.py", line 1573, in execute | |
| return self.tool_action.execute(self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs) | |
| File "lib/galaxy/tools/actions/__init__.py", line 350, in execute | |
| params=wrapped_params.params, | |
| File "lib/galaxy/tools/parameters/wrapped.py", line 44, in params | |
| self.wrap_values(self.tool.inputs, params, skip_missing_values=not self.tool.check_values) | |
| File "lib/galaxy/tools/parameters/wrapped.py", line 68, in wrap_values | |
| self.wrap_values(input.cases[current].inputs, values, skip_missing_values=skip_missing_values) | |
| File "lib/galaxy/tools/parameters/wrapped.py", line 59, in wrap_values | |
| value = input_values[input.name] | |
| KeyError: 'job_cores' |
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