Created
August 15, 2019 14:30
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(partial) EasyBuild log for failed build of /scratch/escobar/easybuild/tmp/eb-vCB2DP/files_pr8588/m/MAGeCK/MAGeCK-0.5.9-foss-2018b-Python-3.6.6.eb (PR #8588)
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| == 2019-08-15 16:30:14,094 easyblock.py:279 INFO This is EasyBuild 3.9.3 (framework: 3.9.3, easyblocks: 3.9.3) on host worker01.cluster.bc2.ch. | |
| == 2019-08-15 16:30:14,094 easyblock.py:285 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages/easybuild_easyblocks-3.9.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.pyo) | |
| == 2019-08-15 16:30:14,094 easyblock.py:840 INFO Build dir set to /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6 | |
| == 2019-08-15 16:30:14,094 easyblock.py:900 INFO Software install dir set to /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 | |
| == 2019-08-15 16:30:14,094 easyblock.py:905 INFO Module install dir set to /scicore/home/scicore/escobar/.local/easybuild/modules/all | |
| == 2019-08-15 16:30:14,094 easyblock.py:264 INFO Init completed for application name MAGeCK version 0.5.9 | |
| == 2019-08-15 16:30:14,095 pythonpackage.py:227 INFO Using default value for expected module name (lowercase software name): 'mageck' | |
| == 2019-08-15 16:30:14,095 pythonpackage.py:260 INFO Using pip with --no-deps option | |
| == 2019-08-15 16:30:14,095 environment.py:97 INFO Environment variable XDG_CACHE_HOME set to /scratch/escobar/easybuild/tmp/eb-vCB2DP (previously undefined) | |
| == 2019-08-15 16:30:14,095 pythonpackage.py:273 INFO Using /scratch/escobar/easybuild/tmp/eb-vCB2DP as pip cache directory | |
| == 2019-08-15 16:30:14,095 easyblock.py:3020 INFO Obtained application instance of for MAGeCK (easyblock: PythonPackage) | |
| == 2019-08-15 16:30:14,096 one.py:146 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2019-08-15 16:30:14,097 filetools.py:1217 INFO Creating directory /scratch/escobar/easybuild/tmp/eb-vCB2DP/reprod_20190815163014_77531 (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:14,098 easyblock.py:3190 INFO Dumped easyconfig instance to /scratch/escobar/easybuild/tmp/eb-vCB2DP/reprod_20190815163014_77531/MAGeCK-0.5.9-foss-2018b-Python-3.6.6.eb | |
| == 2019-08-15 16:30:14,098 filetools.py:1217 INFO Creating directory /scratch/escobar/easybuild/tmp/eb-vCB2DP/reprod_20190815163014_77531/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:14,099 filetools.py:1687 INFO /scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages/easybuild_easyblocks-3.9.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py copied to /scratch/escobar/easybuild/tmp/eb-vCB2DP/reprod_20190815163014_77531/easyblocks/pythonpackage.py | |
| == 2019-08-15 16:30:14,099 easyblock.py:3205 INFO Dumped easyblock pythonpackage.py required for reproduction to /scratch/escobar/easybuild/tmp/eb-vCB2DP/reprod_20190815163014_77531/easyblocks | |
| == 2019-08-15 16:30:14,099 easyblock.py:1601 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2019-08-15 16:30:14,099 build_log.py:252 INFO building and installing MAGeCK/0.5.9-foss-2018b-Python-3.6.6... | |
| == 2019-08-15 16:30:14,099 build_log.py:252 INFO fetching files... | |
| == 2019-08-15 16:30:14,099 easyblock.py:2800 INFO Starting fetch step | |
| == 2019-08-15 16:30:14,100 easyblock.py:2806 INFO Running method fetch_step part of step fetch | |
| == 2019-08-15 16:30:14,100 easyblock.py:1682 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2019-08-15 16:30:14,100 filetools.py:396 INFO Command eb found at /scicore/soft/apps/EasyBuild/3.9.3/bin/eb | |
| == 2019-08-15 16:30:14,104 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:18,095 filetools.py:539 INFO Downloaded file mageck-0.5.9.tar.gz from url https://sourceforge.net/projects/mageck/files/0.5/mageck-0.5.9.tar.gz to /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz | |
| == 2019-08-15 16:30:18,096 filetools.py:569 INFO Successful download of file mageck-0.5.9.tar.gz from url https://sourceforge.net/projects/mageck/files/0.5/mageck-0.5.9.tar.gz to path /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz | |
| == 2019-08-15 16:30:18,096 easyblock.py:752 INFO Successfully downloaded source file mageck-0.5.9.tar.gz from https://sourceforge.net/projects/mageck/files/0.5/mageck-0.5.9.tar.gz | |
| == 2019-08-15 16:30:18,096 easyblock.py:393 INFO Added sources: [{'path': '/scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz', 'cmd': None, 'finalpath': '/scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6', 'name': 'mageck-0.5.9.tar.gz', 'checksum': 'a83be9fec4d1d4131b5e455324878f3675605bb1263c7788c66ee88103a992bd'}] | |
| == 2019-08-15 16:30:18,097 easyblock.py:1723 INFO no patches provided | |
| == 2019-08-15 16:30:18,105 easyblock.py:1733 INFO md5 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz: d6c075ae1dba918669962bf6bc563bce | |
| == 2019-08-15 16:30:18,116 easyblock.py:1733 INFO sha256 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz: a83be9fec4d1d4131b5e455324878f3675605bb1263c7788c66ee88103a992bd | |
| == 2019-08-15 16:30:18,117 easyblock.py:1768 INFO Checking dirs that need to be created: ['/scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6', '/scicore/home/scicore/escobar/.local/easybuild/modules/all/MAGeCK', '/scicore/home/scicore/escobar/.local/easybuild/modules/bio/MAGeCK'] | |
| == 2019-08-15 16:30:18,120 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:18,122 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/modules/all/MAGeCK (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:18,124 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/modules/bio/MAGeCK (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:18,125 build_log.py:252 INFO creating build dir, resetting environment... | |
| == 2019-08-15 16:30:18,126 easyblock.py:2800 INFO Starting ready step | |
| == 2019-08-15 16:30:18,127 easyblock.py:2806 INFO Running method check_readiness_step part of step ready | |
| == 2019-08-15 16:30:18,129 run.py:192 INFO running cmd: ulimit -u | |
| == 2019-08-15 16:30:18,139 easyblock.py:1620 INFO Setting parallelism: 20 | |
| == 2019-08-15 16:30:18,249 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-08-15 16:30:18,249 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:18,250 easyblock.py:1634 WARNING Loaded modules detected: ['EasyBuild/3.9.3'] | |
| == 2019-08-15 16:30:18,250 easyblock.py:2806 INFO Running method make_builddir part of step ready | |
| == 2019-08-15 16:30:18,251 filetools.py:1217 INFO Creating directory /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6 (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:18,251 easyblock.py:2806 INFO Running method reset_env part of step ready | |
| == 2019-08-15 16:30:18,252 easyblock.py:2806 INFO Running method handle_iterate_opts part of step ready | |
| == 2019-08-15 16:30:18,253 build_log.py:252 INFO unpacking... | |
| == 2019-08-15 16:30:18,253 easyblock.py:2800 INFO Starting source step | |
| == 2019-08-15 16:30:18,254 easyblock.py:2806 INFO Running method checksum_step part of step source | |
| == 2019-08-15 16:30:18,265 easyblock.py:1784 INFO Checksum verification for /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz using a83be9fec4d1d4131b5e455324878f3675605bb1263c7788c66ee88103a992bd passed. | |
| == 2019-08-15 16:30:18,265 easyblock.py:2806 INFO Running method extract_step part of step source | |
| == 2019-08-15 16:30:18,266 easyblock.py:1852 INFO Unpacking source mageck-0.5.9.tar.gz | |
| == 2019-08-15 16:30:18,267 run.py:192 INFO running cmd: tar xzf /scicore/home/scicore/escobar/.local/easybuild/sources/m/MAGeCK/mageck-0.5.9.tar.gz | |
| == 2019-08-15 16:30:18,353 build_log.py:252 INFO patching... | |
| == 2019-08-15 16:30:18,354 easyblock.py:2800 INFO Starting patch step | |
| == 2019-08-15 16:30:18,355 easyblock.py:2806 INFO Running method patch_step part of step patch | |
| == 2019-08-15 16:30:18,355 build_log.py:252 INFO preparing... | |
| == 2019-08-15 16:30:18,355 easyblock.py:2800 INFO Starting prepare step | |
| == 2019-08-15 16:30:18,356 easyblock.py:2806 INFO Running method prepare_step part of step prepare | |
| == 2019-08-15 16:30:18,965 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-08-15 16:30:18,965 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:19,542 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-08-15 16:30:19,543 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:20,074 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib:/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib:/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/hwloc/1.11.10-GCCcore-7.3.0/lib:/scicore/soft/apps/libpciaccess/0.14-GCCcore-7.3.0/lib:/scicore/soft/apps/libxml2/2.9.8-GCCcore-7.3.0/lib:/scicore/soft/apps/XZ/5.2.4-GCCcore-7.3.0/lib:/scicore/soft/apps/numactl/2.0.11-GCCcore-7.3.0/lib:/scicore/soft/apps/zlib/1.2.11-GCCcore-7.3.0/lib:/scicore/soft/apps/binutils/2.30-GCCcore-7.3.0/lib:/scicore/soft/apps/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/scicore/soft/apps/GCCcore/7.3.0/lib64:/scicore/soft/apps/GCCcore/7.3.0/lib (previous value: '/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib:/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib:/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/hwloc/1.11.10-GCCcore-7.3.0/lib:/scicore/soft/apps/libpciaccess/0.14-GCCcore-7.3.0/lib:/scicore/soft/apps/libxml2/2.9.8-GCCcore-7.3.0/lib:/scicore/soft/apps/XZ/5.2.4-GCCcore-7.3.0/lib:/scicore/soft/apps/numactl/2.0.11-GCCcore-7.3.0/lib:/scicore/soft/apps/zlib/1.2.11-GCCcore-7.3.0/lib:/scicore/soft/apps/binutils/2.30-GCCcore-7.3.0/lib:/scicore/soft/apps/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/scicore/soft/apps/GCCcore/7.3.0/lib64:/scicore/soft/apps/GCCcore/7.3.0/lib') | |
| == 2019-08-15 16:30:20,074 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:20,228 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib:/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib:/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/hwloc/1.11.10-GCCcore-7.3.0/lib:/scicore/soft/apps/libpciaccess/0.14-GCCcore-7.3.0/lib:/scicore/soft/apps/libxml2/2.9.8-GCCcore-7.3.0/lib:/scicore/soft/apps/XZ/5.2.4-GCCcore-7.3.0/lib:/scicore/soft/apps/numactl/2.0.11-GCCcore-7.3.0/lib:/scicore/soft/apps/zlib/1.2.11-GCCcore-7.3.0/lib:/scicore/soft/apps/binutils/2.30-GCCcore-7.3.0/lib:/scicore/soft/apps/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/scicore/soft/apps/GCCcore/7.3.0/lib64:/scicore/soft/apps/GCCcore/7.3.0/lib (previous value: '/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib:/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib:/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/hwloc/1.11.10-GCCcore-7.3.0/lib:/scicore/soft/apps/libpciaccess/0.14-GCCcore-7.3.0/lib:/scicore/soft/apps/libxml2/2.9.8-GCCcore-7.3.0/lib:/scicore/soft/apps/XZ/5.2.4-GCCcore-7.3.0/lib:/scicore/soft/apps/numactl/2.0.11-GCCcore-7.3.0/lib:/scicore/soft/apps/zlib/1.2.11-GCCcore-7.3.0/lib:/scicore/soft/apps/binutils/2.30-GCCcore-7.3.0/lib:/scicore/soft/apps/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/scicore/soft/apps/GCCcore/7.3.0/lib64:/scicore/soft/apps/GCCcore/7.3.0/lib') | |
| == 2019-08-15 16:30:20,229 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:20,847 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scicore/soft/apps/Python/3.6.6-foss-2018b/lib/python3.6/site-packages/numpy-1.15.0-py3.6-linux-x86_64.egg/numpy/core/lib:/scicore/soft/apps/Python/3.6.6-foss-2018b/lib:/scicore/soft/apps/libffi/3.2.1-GCCcore-7.3.0/lib64:/scicore/soft/apps/libffi/3.2.1-GCCcore-7.3.0/lib:/scicore/soft/apps/GMP/6.1.2-GCCcore-7.3.0/lib:/scicore/soft/apps/SQLite/3.24.0-GCCcore-7.3.0/lib:/scicore/soft/apps/Tcl/8.6.8-GCCcore-7.3.0/lib:/scicore/soft/apps/libreadline/7.0-GCCcore-7.3.0/lib:/scicore/soft/apps/ncurses/6.1-GCCcore-7.3.0/lib:/scicore/soft/apps/bzip2/1.0.6-GCCcore-7.3.0/lib:/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib:/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib:/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib:/scicore/soft/apps/hwloc/1.11.10-GCCcore-7.3.0/lib:/scicore/soft/apps/libpciaccess/0.14-GCCcore-7.3.0/lib:/scicore/soft/apps/libxml2/2.9.8-GCCcore-7.3.0/lib:/scicore/soft/apps/XZ/5.2.4-GCCcore-7.3.0/lib:/scicore/soft/apps/numactl/2.0.11-GCCcore-7.3.0/lib:/scicore/soft/apps/zlib/1.2.11-GCCcore-7.3.0/lib:/scicore/soft/apps/binutils/2.30-GCCcore-7.3.0/lib:/scicore/soft/apps/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/scicore/soft/apps/GCCcore/7.3.0/lib64:/scicore/soft/apps/GCCcore/7.3.0/lib (previous value: '/scicore/soft/apps/Python/3.6.6-foss-2018b/lib/python3.6/site-packages/numpy-1.15.0-py3.6-linux-x86_64.egg/numpy/core/lib:/scicore/soft/apps/Python/3.6.6-foss-2018b/lib:/scicore/soft/apps/libffi/3.2.1-GCCcore-7.3.0/lib64:/scicore/soft/apps/libffi/3.2.1-GCCcore-7.3.0/lib:/scicore/soft/apps/GMP/6.1.2-GCCcore-7.3.0/lib:/scicore/soft/apps/SQLite/3.24.0-GCCcore-7.3.0/lib:/scicore/soft/apps/Tcl/8.6.8-GCCcore-7.3.0/lib:/scicore/soft/apps/libreadline/7.0-GCCcore-7.3.0/lib:/scicore/soft/apps/ncurses/6.1-GCCcore-7.3.0/lib:/scicore/soft/apps/bzip2/1.0.6-GCCcore-7.3.0/lib') | |
| == 2019-08-15 16:30:20,847 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-08-15 16:30:20,852 toolchain.py:647 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2019-08-15 16:30:20,855 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2019-08-15 16:30:20,855 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2019-08-15 16:30:20,855 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2019-08-15 16:30:20,855 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2019-08-15 16:30:20,856 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2019-08-15 16:30:20,858 compiler.py:346 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
| == 2019-08-15 16:30:20,870 variables.py:201 WARNING flags_for_subdirs: directory /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib64 was not found | |
| == 2019-08-15 16:30:20,876 variables.py:201 WARNING flags_for_subdirs: directory /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib64 was not found | |
| == 2019-08-15 16:30:20,883 variables.py:201 WARNING flags_for_subdirs: directory /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib64 was not found | |
| == 2019-08-15 16:30:20,886 variables.py:201 WARNING flags_for_subdirs: directory /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib64 was not found | |
| == 2019-08-15 16:30:20,888 variables.py:201 WARNING flags_for_subdirs: directory /scicore/soft/apps/Python/3.6.6-foss-2018b/lib64 was not found | |
| == 2019-08-15 16:30:20,894 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,894 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,895 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,895 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,895 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,895 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,896 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,896 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,896 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,896 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,896 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,897 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2019-08-15 16:30:20,898 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2019-08-15 16:30:20,898 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,898 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,898 environment.py:97 INFO Environment variable CPPFLAGS set to -I/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include -I/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include -I/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include -I/scicore/soft/apps/Python/3.6.6-foss-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,898 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include -I/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include -I/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include -I/scicore/soft/apps/Python/3.6.6-foss-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,899 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2019-08-15 16:30:20,899 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2019-08-15 16:30:20,899 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,899 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,899 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,900 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,900 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,900 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,900 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,900 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,901 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,902 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,902 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,902 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,902 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,902 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-08-15 16:30:20,903 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-08-15 16:30:20,903 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,903 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,903 environment.py:97 INFO Environment variable FFT_INC_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,903 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/include (previously undefined) | |
| == 2019-08-15 16:30:20,904 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,904 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,904 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-08-15 16:30:20,904 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-08-15 16:30:20,904 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,905 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,906 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,906 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,906 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,906 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,906 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable LDFLAGS set to -L/scicore/soft/apps/GCCcore/7.3.0/lib64 -L/scicore/soft/apps/GCCcore/7.3.0/lib -L/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib -L/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib -L/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib -L/scicore/soft/apps/Python/3.6.6-foss-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/scicore/soft/apps/GCCcore/7.3.0/lib64 -L/scicore/soft/apps/GCCcore/7.3.0/lib -L/scicore/soft/apps/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib -L/scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib -L/scicore/soft/apps/FFTW/3.3.8-gompi-2018b/lib -L/scicore/soft/apps/Python/3.6.6-foss-2018b/lib (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,907 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,908 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2019-08-15 16:30:20,908 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2019-08-15 16:30:20,908 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2019-08-15 16:30:20,908 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,909 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,910 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,910 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,910 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2019-08-15 16:30:20,910 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2019-08-15 16:30:20,910 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,911 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,912 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-08-15 16:30:20,912 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2019-08-15 16:30:20,912 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2019-08-15 16:30:20,912 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2019-08-15 16:30:20,912 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,913 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2019-08-15 16:30:20,914 environment.py:97 INFO Environment variable MPI_INC_DIR set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,914 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/include (previously undefined) | |
| == 2019-08-15 16:30:20,914 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,914 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib (previously undefined) | |
| == 2019-08-15 16:30:20,914 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib/libmpi.so (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /scicore/soft/apps/OpenMPI/3.1.1-GCC-7.3.0-2.30/lib/libmpi.so (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2019-08-15 16:30:20,915 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2019-08-15 16:30:20,916 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2019-08-15 16:30:20,916 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,916 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,916 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,916 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,917 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scicore/soft/apps/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,918 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2019-08-15 16:30:20,919 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,919 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-08-15 16:30:20,919 easyblock.py:1521 INFO Using /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6/mageck-0.5.9/ as start dir | |
| == 2019-08-15 16:30:20,920 filetools.py:396 INFO Command python found at /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python | |
| == 2019-08-15 16:30:20,920 pythonpackage.py:337 INFO Python command being used: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python | |
| == 2019-08-15 16:30:20,921 run.py:192 INFO running cmd: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' | |
| == 2019-08-15 16:30:21,030 run.py:192 INFO running cmd: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' | |
| == 2019-08-15 16:30:21,119 build_log.py:252 INFO configuring... | |
| == 2019-08-15 16:30:21,119 easyblock.py:2800 INFO Starting configure step | |
| == 2019-08-15 16:30:21,120 easyblock.py:2806 INFO Running method configure_step part of step configure | |
| == 2019-08-15 16:30:21,120 run.py:192 INFO running cmd: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -V | |
| == 2019-08-15 16:30:21,136 run.py:192 INFO running cmd: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -c 'import sys; print(sys.executable)' | |
| == 2019-08-15 16:30:21,206 environment.py:97 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) | |
| == 2019-08-15 16:30:21,207 run.py:192 INFO running cmd: /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -c 'import sys; print(sys.path)' | |
| == 2019-08-15 16:30:21,276 build_log.py:252 INFO building... | |
| == 2019-08-15 16:30:21,276 easyblock.py:2800 INFO Starting build step | |
| == 2019-08-15 16:30:21,277 easyblock.py:2806 INFO Running method build_step part of step build | |
| == 2019-08-15 16:30:21,277 build_log.py:252 INFO testing... | |
| == 2019-08-15 16:30:21,278 easyblock.py:2800 INFO Starting test step | |
| == 2019-08-15 16:30:21,278 easyblock.py:2806 INFO Running method test_step part of step test | |
| == 2019-08-15 16:30:21,279 build_log.py:252 INFO installing... | |
| == 2019-08-15 16:30:21,279 easyblock.py:2800 INFO Starting install step | |
| == 2019-08-15 16:30:21,279 easyblock.py:2806 INFO Running method stage_install_step part of step install | |
| == 2019-08-15 16:30:21,280 easyblock.py:2806 INFO Running method make_installdir part of step install | |
| == 2019-08-15 16:30:21,280 easyblock.py:925 INFO Found old directory /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 | |
| == 2019-08-15 16:30:21,281 filetools.py:1313 INFO Path /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 successfully removed. | |
| == 2019-08-15 16:30:21,281 easyblock.py:932 INFO Removed old directory /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 | |
| == 2019-08-15 16:30:21,281 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:21,282 easyblock.py:2806 INFO Running method install_step part of step install | |
| == 2019-08-15 16:30:21,282 filetools.py:1217 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6/lib/python3.6/site-packages (parents: True, set_gid: False, sticky: False) | |
| == 2019-08-15 16:30:21,285 environment.py:97 INFO Environment variable PYTHONPATH set to /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6/lib/python3.6/site-packages (previously undefined) | |
| == 2019-08-15 16:30:21,285 run.py:192 INFO running cmd: pip --version | |
| == 2019-08-15 16:30:22,130 pythonpackage.py:360 INFO Found pip version 18.0, OK | |
| == 2019-08-15 16:30:22,131 run.py:192 INFO running cmd: pip install --prefix=/scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 --no-deps --ignore-installed --no-build-isolation . | |
| == 2019-08-15 16:30:24,281 build_log.py:163 ERROR EasyBuild crashed with an error (at ?:124 in __init__): cmd " pip install --prefix=/scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 --no-deps --ignore-installed --no-build-isolation ." exited with exit code 1 and output: | |
| Processing /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6/mageck-0.5.9 | |
| Installing collected packages: mageck | |
| Running setup.py install for mageck: started | |
| Running setup.py install for mageck: finished with status 'error' | |
| Complete output from command /scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -u -c "import setuptools, tokenize;__file__='/scratch/escobar/easybuild/tmp/eb-vCB2DP/pip-req-build-q8hpurso/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /scratch/escobar/easybuild/tmp/eb-vCB2DP/pip-record-pw5x_8nm/install-record.txt --single-version-externally-managed --prefix /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 --compile: | |
| usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] | |
| or: -c --help [cmd1 cmd2 ...] | |
| or: -c --help-commands | |
| or: -c cmd --help | |
| error: option --single-version-externally-managed not recognized | |
| ---------------------------------------- | |
| Command "/scicore/soft/apps/Python/3.6.6-foss-2018b/bin/python -u -c "import setuptools, tokenize;__file__='/scratch/escobar/easybuild/tmp/eb-vCB2DP/pip-req-build-q8hpurso/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /scratch/escobar/easybuild/tmp/eb-vCB2DP/pip-record-pw5x_8nm/install-record.txt --single-version-externally-managed --prefix /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 --compile" failed with error code 1 in /scratch/escobar/easybuild/tmp/eb-vCB2DP/pip-req-build-q8hpurso/ | |
| (at easybuild/tools/run.py:501 in parse_cmd_output) | |
| == 2019-08-15 16:30:24,282 easyblock.py:3050 WARNING build failed (first 300 chars): cmd " pip install --prefix=/scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6 --no-deps --ignore-installed --no-build-isolation ." exited with exit code 1 and output: | |
| Processing /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6/mageck-0.5.9 | |
| == 2019-08-15 16:30:24,282 easyblock.py:294 INFO Closing log for application name MAGeCK version 0.5.9 |
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