Created
November 19, 2013 14:31
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eb debug log
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| [pub@login11 cap3]$ cat /scratch/easybuild-C0UyT4.log | |
| == 2013-11-19 15:27:48,758 main INFO This is EasyBuild 1.9.0 (framework: 1.9.0, easyblocks: 1.9.0) on host login11. | |
| == 2013-11-19 15:27:48,758 main.filetools DEBUG run_cmd: running cmd which eb (in /tmp/cap3) | |
| == 2013-11-19 15:27:48,766 main.filetools DEBUG cmd "which eb" exited with exitcode 0 and output: | |
| /import/bc2/soft/centos6/software/EasyBuild/1.9.0/bin/eb | |
| == 2013-11-19 15:27:48,767 main.filetools DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2013-11-19 15:27:48,767 main.easyconfig.tools DEBUG Also considering installation prefix /import/bc2/soft/centos6/software/EasyBuild/1.9.0... | |
| == 2013-11-19 15:27:48,768 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,768 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_easyconfigs-1.9.0.0-py2.6.egg/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,769 main.easyconfig.tools DEBUG Added /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_easyconfigs-1.9.0.0-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,769 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_easyblocks-1.9.0-py2.6.egg/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,769 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,770 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,770 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,771 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,771 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,772 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,772 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,772 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,773 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,773 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,774 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,774 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,774 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,774 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,775 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /import/bc2/soft/centos6/software/EasyBuild/1.9.0/easybuild/easyconfigs | |
| == 2013-11-19 15:27:48,776 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle init with modifications to support oldstyle options | |
| == 2013-11-19 15:27:48,776 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle_init filename /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild_config.py kwargs {} | |
| == 2013-11-19 15:27:48,776 main.config DEBUG variables before oldstyle_init {} | |
| == 2013-11-19 15:27:48,776 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle_read_configuration filename /import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild_config.py | |
| == 2013-11-19 15:27:48,778 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key build_path usage found, replacing with newkey buildpath | |
| == 2013-11-19 15:27:48,778 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key module_classes usage found, replacing with newkey moduleclasses | |
| == 2013-11-19 15:27:48,779 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key source_path usage found, replacing with newkey sourcepath | |
| == 2013-11-19 15:27:48,779 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key install_path usage found, replacing with newkey installpath | |
| == 2013-11-19 15:27:48,779 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key repository_path usage found, replacing with newkey repositorypath | |
| == 2013-11-19 15:27:48,779 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key log_dir usage found, replacing with newkey tmp_logdir | |
| == 2013-11-19 15:27:48,779 main.config WARNING Deprecated functionality, will no longer work in v2.0: oldstyle key log_format usage found, replacing with newkey logfile_format | |
| == 2013-11-19 15:27:48,780 main.config DEBUG variables after oldstyle_init read_configuration (/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild_config.py) {'GitRepository': <class 'easybuild.tools.repository.GitRepository'>, 'buildpath': '/import/bc2/home/admin/pub/.local/easybuild/build', 'repository': <easybuild.tools.repository.FileRepository object at 0x2242790>, 'installpath': '/import/bc2/home/admin/pub/.local/easybuild', 'sourcepath': '/import/bc2/home/admin/pub/.local/easybuild/sources', 'repositorypath': '/import/bc2/home/admin/pub/.local/easybuild/ebfiles_repo', 'moduleclasses': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'tmp_logdir': '/scratch', 'FileRepository': <class 'easybuild.tools.repository.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (University of Luxembourg)\n', 'SvnRepository': <class 'easybuild.tools.repository.SvnRepository'>} | |
| == 2013-11-19 15:27:48,780 main.config WARNING Deprecated functionality, will no longer work in v2.0: Adapt code to use read_environment from easybuild.tools.utilities and do not use oldstyle environment variables | |
| == 2013-11-19 15:27:48,780 main.config DEBUG Old style env var EASYBUILDBUILDPATH not defined. | |
| == 2013-11-19 15:27:48,780 main.config DEBUG Old style env var EASYBUILDTESTOUTPUT not defined. | |
| == 2013-11-19 15:27:48,780 main.config DEBUG Old style env var EASYBUILDCONFIG not defined. | |
| == 2013-11-19 15:27:48,780 main.config DEBUG Old style env var EASYBUILDSOURCEPATH not defined. | |
| == 2013-11-19 15:27:48,780 main.config DEBUG Old style env var EASYBUILDINSTALLPATH not defined. | |
| == 2013-11-19 15:27:48,781 main.config DEBUG Old style env var EASYBUILDLOGDIR not defined. | |
| == 2013-11-19 15:27:48,781 main.config DEBUG Old style env var EASYBUILDLOGFORMAT not defined. | |
| == 2013-11-19 15:27:48,781 main.config DEBUG variables after oldstyle_init read_environment {'GitRepository': <class 'easybuild.tools.repository.GitRepository'>, 'buildpath': '/import/bc2/home/admin/pub/.local/easybuild/build', 'repository': <easybuild.tools.repository.FileRepository object at 0x2242790>, 'installpath': '/import/bc2/home/admin/pub/.local/easybuild', 'sourcepath': '/import/bc2/home/admin/pub/.local/easybuild/sources', 'repositorypath': '/import/bc2/home/admin/pub/.local/easybuild/ebfiles_repo', 'moduleclasses': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'tmp_logdir': '/scratch', 'FileRepository': <class 'easybuild.tools.repository.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (University of Luxembourg)\n', 'SvnRepository': <class 'easybuild.tools.repository.SvnRepository'>} | |
| == 2013-11-19 15:27:48,781 main.config DEBUG Oldstyle support: no action for dest moduleclasses. | |
| == 2013-11-19 15:27:48,781 main.config DEBUG Oldstyle support: no action for dest logfile_format. | |
| == 2013-11-19 15:27:48,781 main.config DEBUG Oldstyle support: no action for dest tmp_logdir. | |
| == 2013-11-19 15:27:48,782 main.config DEBUG Updating config variables with generaloption dict {'modules_tool': 'EnvironmentModulesC', 'subdir_modules': 'modules', 'buildpath': '/tmp/easybuild', 'repository': 'FileRepository', 'show_default_moduleclasses': False, 'installpath': '/import/bc2/soft/centos6', 'sourcepath': '/import/bc2/soft/centos6/source', 'testoutput': None, 'module_naming_scheme': 'JustAppNameAndVersion', 'avail_repositories': False, 'repositorypath': ['/import/bc2/soft/centos6/installed_eb_files'], 'avail_module_naming_schemes': False, 'prefix': None, 'subdir_software': 'software', 'avail_modules_tools': False, 'config': '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild_config.py'} | |
| == 2013-11-19 15:27:48,782 main.config DEBUG Config variables: {'show_default_moduleclasses': False, 'module_naming_scheme': 'JustAppNameAndVersion', 'avail_module_naming_schemes': False, 'prefix': None, 'FileRepository': <class 'easybuild.tools.repository.FileRepository'>, 'modules_tool': 'EnvironmentModulesC', 'GitRepository': <class 'easybuild.tools.repository.GitRepository'>, 'installpath': '/import/bc2/soft/centos6', 'testoutput': None, 'subdir_software': 'software', 'config': '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/easybuild_config.py', '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (University of Luxembourg)\n', 'buildpath': '/tmp/easybuild', 'repository': 'FileRepository', 'repositorypath': ['/import/bc2/soft/centos6/installed_eb_files'], 'moduleclasses': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis', 'geo', 'lang', 'toolchain'], 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'tmp_logdir': '/scratch', 'subdir_modules': 'modules', 'avail_modules_tools': False, 'sourcepath': '/import/bc2/soft/centos6/source', 'avail_repositories': False, 'SvnRepository': <class 'easybuild.tools.repository.SvnRepository'>} | |
| == 2013-11-19 15:27:48,823 main DEBUG Paths: [('CAP3-intel.eb', False)] | |
| == 2013-11-19 15:27:48,824 main.easyconfig.format.format DEBUG retrieve_blocks_in_spec: derived easyconfig format version: 1.0 | |
| == 2013-11-19 15:27:48,824 main DEBUG Processing easyconfig /tmp/cap3/CAP3-intel.eb | |
| == 2013-11-19 15:27:48,825 main.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis', 'geo', 'lang', 'toolchain'] | |
| == 2013-11-19 15:27:48,826 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: _legacy_license does not have to be checked | |
| == 2013-11-19 15:27:48,826 main.EasyConfig DEBUG List of valid stops obtained: ['fetch', 'ready', 'source', 'patch', 'prepare', 'configure', 'build', 'test', 'install', 'extensions', 'package', 'postproc', 'sanitycheck', 'cleanup', 'module', 'testcases'] | |
| == 2013-11-19 15:27:48,827 main.EasyConfigParser DEBUG Process filename /tmp/cap3/CAP3-intel.eb with get function (<function read_file at 0x1f0a230>, ('/tmp/cap3/CAP3-intel.eb',)), set function (<function write_file at 0x1f0a2a8>, ('/tmp/cap3/CAP3-intel.eb', None)) | |
| == 2013-11-19 15:27:48,827 main.EasyConfigParser DEBUG No version found, using default 1.0 | |
| == 2013-11-19 15:27:48,829 main.FormatOneZero DEBUG No section found. | |
| == 2013-11-19 15:27:48,829 main.FormatOneZero DEBUG Found header | |
| == 2013-11-19 15:27:48,829 main.easyconfig.format.pyheaderconfigobj WARNING Deprecated functionality, will no longer work in v2.0: Magic 'global' easyconfigs variables like shared_lib_ext should no longer be used | |
| == 2013-11-19 15:27:48,830 main.FormatOneZero DEBUG pyheader initial global_vars {'OS_NAME': 'centos', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x2006150>, 'GPLv2': <easybuild.framework.easyconfig.licenses.License_GPLv2 object at 0x2006250>, 'GPLv3': <easybuild.framework.easyconfig.licenses.License_GPLv3 object at 0x2006210>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCE_TAR': '%(name)s-%(version)s.tar', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'SYS_PYTHON_VERSION': '2.6.6', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(name)s', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '6.4', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'OS_TYPE': 'Linux'} | |
| == 2013-11-19 15:27:48,830 main.FormatOneZero DEBUG pyheader initial local_vars {} | |
| == 2013-11-19 15:27:48,830 main.FormatOneZero DEBUG pyheader text being exec'ed: name = 'CAP3' | |
| version = 'intel-12-21-2007' | |
| easyblock = 'PackedBinary' | |
| homepage = 'http://seq.cs.iastate.edu/' | |
| description = """CAP3 assembly program """ | |
| toolchain = {'name': 'dummy', 'version': 'dummy'} | |
| source_urls = [('http://seq.cs.iastate.edu/CAP3/cap3.linux.tar')] | |
| #sources = ['cap3.linux.tar'] | |
| moduleclass = 'bio' | |
| == 2013-11-19 15:27:48,830 main.FormatOneZero DEBUG pyheader final global_vars {'OS_NAME': 'centos', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x2006150>, 'GPLv2': <easybuild.framework.easyconfig.licenses.License_GPLv2 object at 0x2006250>, 'GPLv3': <easybuild.framework.easyconfig.licenses.License_GPLv3 object at 0x2006210>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCE_TAR': '%(name)s-%(version)s.tar', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'SYS_PYTHON_VERSION': '2.6.6', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(name)s', '__builtins__': {'bytearray': <type 'bytearray'>, 'IndexError': <type 'exceptions.IndexError'>, 'all': <built-in function all>, 'help': Type help() for interactive help, or help(object) for help about object., 'vars': <built-in function vars>, 'SyntaxError': <type 'exceptions.SyntaxError'>, 'unicode': <type 'unicode'>, 'UnicodeDecodeError': <type 'exceptions.UnicodeDecodeError'>, 'isinstance': <built-in function isinstance>, 'copyright': Copyright (c) 2001-2010 Python Software Foundation. | |
| All Rights Reserved. | |
| Copyright (c) 2000 BeOpen.com. | |
| All Rights Reserved. | |
| Copyright (c) 1995-2001 Corporation for National Research Initiatives. | |
| All Rights Reserved. | |
| Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam. | |
| All Rights Reserved., 'NameError': <type 'exceptions.NameError'>, 'BytesWarning': <type 'exceptions.BytesWarning'>, 'dict': <type 'dict'>, 'input': <built-in function input>, 'oct': <built-in function oct>, 'bin': <built-in function bin>, 'SystemExit': <type 'exceptions.SystemExit'>, 'StandardError': <type 'exceptions.StandardError'>, 'format': <built-in function format>, 'repr': <built-in function repr>, 'sorted': <built-in function sorted>, 'False': False, 'RuntimeWarning': <type 'exceptions.RuntimeWarning'>, 'list': <type 'list'>, 'iter': <built-in function iter>, 'reload': <built-in function reload>, 'Warning': <type 'exceptions.Warning'>, '__package__': None, 'round': <built-in function round>, 'dir': <built-in function dir>, 'cmp': <built-in function cmp>, 'set': <type 'set'>, 'bytes': <type 'str'>, 'reduce': <built-in function reduce>, 'intern': <built-in function intern>, 'issubclass': <built-in function issubclass>, 'Ellipsis': Ellipsis, 'EOFError': <type 'exceptions.EOFError'>, 'locals': <built-in function locals>, 'BufferError': <type 'exceptions.BufferError'>, 'slice': <type 'slice'>, 'FloatingPointError': <type 'exceptions.FloatingPointError'>, 'sum': <built-in function sum>, 'getattr': <built-in function getattr>, 'abs': <built-in function abs>, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'print': <built-in function print>, 'True': True, 'FutureWarning': <type 'exceptions.FutureWarning'>, 'ImportWarning': <type 'exceptions.ImportWarning'>, 'None': None, 'hash': <built-in function hash>, 'ReferenceError': <type 'exceptions.ReferenceError'>, 'len': <built-in function len>, 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands | |
| for supporting Python development. See www.python.org for more information., 'frozenset': <type 'frozenset'>, '__name__': '__builtin__', 'ord': <built-in function ord>, 'super': <type 'super'>, 'TypeError': <type 'exceptions.TypeError'>, 'license': See http://www.python.org/2.6/license.html, 'KeyboardInterrupt': <type 'exceptions.KeyboardInterrupt'>, 'UserWarning': <type 'exceptions.UserWarning'>, 'filter': <built-in function filter>, 'range': <built-in function range>, 'staticmethod': <type 'staticmethod'>, 'SystemError': <type 'exceptions.SystemError'>, 'BaseException': <type 'exceptions.BaseException'>, 'pow': <built-in function pow>, 'RuntimeError': <type 'exceptions.RuntimeError'>, 'float': <type 'float'>, 'MemoryError': <type 'exceptions.MemoryError'>, 'StopIteration': <type 'exceptions.StopIteration'>, 'globals': <built-in function globals>, 'divmod': <built-in function divmod>, 'enumerate': <type 'enumerate'>, 'apply': <built-in function apply>, 'LookupError': <type 'exceptions.LookupError'>, 'open': <built-in function open>, 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'basestring': <type 'basestring'>, 'UnicodeError': <type 'exceptions.UnicodeError'>, 'zip': <built-in function zip>, 'hex': <built-in function hex>, 'long': <type 'long'>, 'next': <built-in function next>, 'ImportError': <type 'exceptions.ImportError'>, 'chr': <built-in function chr>, 'xrange': <type 'xrange'>, 'type': <type 'type'>, '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", 'Exception': <type 'exceptions.Exception'>, 'tuple': <type 'tuple'>, 'UnicodeTranslateError': <type 'exceptions.UnicodeTranslateError'>, 'reversed': <type 'reversed'>, 'UnicodeEncodeError': <type 'exceptions.UnicodeEncodeError'>, 'IOError': <type 'exceptions.IOError'>, 'hasattr': <built-in function hasattr>, 'delattr': <built-in function delattr>, 'setattr': <built-in function setattr>, 'raw_input': <built-in function raw_input>, 'SyntaxWarning': <type 'exceptions.SyntaxWarning'>, 'compile': <built-in function compile>, 'ArithmeticError': <type 'exceptions.ArithmeticError'>, 'str': <type 'str'>, 'property': <type 'property'>, 'GeneratorExit': <type 'exceptions.GeneratorExit'>, 'int': <type 'int'>, '__import__': <built-in function __import__>, 'KeyError': <type 'exceptions.KeyError'>, 'coerce': <built-in function coerce>, 'PendingDeprecationWarning': <type 'exceptions.PendingDeprecationWarning'>, 'file': <type 'file'>, 'EnvironmentError': <type 'exceptions.EnvironmentError'>, 'unichr': <built-in function unichr>, 'id': <built-in function id>, 'OSError': <type 'exceptions.OSError'>, 'DeprecationWarning': <type 'exceptions.DeprecationWarning'>, 'min': <built-in function min>, 'UnicodeWarning': <type 'exceptions.UnicodeWarning'>, 'execfile': <built-in function execfile>, 'any': <built-in function any>, 'complex': <type 'complex'>, 'bool': <type 'bool'>, 'ValueError': <type 'exceptions.ValueError'>, 'NotImplemented': NotImplemented, 'map': <built-in function map>, 'buffer': <type 'buffer'>, 'max': <built-in function max>, 'object': <type 'object'>, 'TabError': <type 'exceptions.TabError'>, 'callable': <built-in function callable>, 'ZeroDivisionError': <type 'exceptions.ZeroDivisionError'>, 'eval': <built-in function eval>, '__debug__': True, 'IndentationError': <type 'exceptions.IndentationError'>, 'AssertionError': <type 'exceptions.AssertionError'>, 'classmethod': <type 'classmethod'>, 'UnboundLocalError': <type 'exceptions.UnboundLocalError'>, 'NotImplementedError': <type 'exceptions.NotImplementedError'>, 'AttributeError': <type 'exceptions.AttributeError'>, 'OverflowError': <type 'exceptions.OverflowError'>}, 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '6.4', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'OS_TYPE': 'Linux'} | |
| == 2013-11-19 15:27:48,831 main.FormatOneZero DEBUG pyheader final local_vars {'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'CAP3', 'moduleclass': 'bio', 'version': 'intel-12-21-2007', 'source_urls': ['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'easyblock': 'PackedBinary', 'homepage': 'http://seq.cs.iastate.edu/', 'description': 'CAP3 assembly program '} | |
| == 2013-11-19 15:27:48,831 main.FormatOneZero DEBUG No docstring found in local_vars | |
| == 2013-11-19 15:27:48,831 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: _legacy_license does not have to be checked | |
| == 2013-11-19 15:27:48,832 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': [None, 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': [None, 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': [None, 'A short description of the software', (0, 'mandatory')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['base', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': [None, 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:48,833 main.easyconfig.templates DEBUG name: name, config: None | |
| == 2013-11-19 15:27:48,833 main.easyconfig.templates DEBUG name: version, config: None | |
| == 2013-11-19 15:27:48,833 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:48,833 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:48,834 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': [None, 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': [None, 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': [None, 'A short description of the software', (0, 'mandatory')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['base', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': [None, 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:48,834 main.easyconfig.templates DEBUG name: name, config: None | |
| == 2013-11-19 15:27:48,835 main.easyconfig.templates DEBUG name: version, config: None | |
| == 2013-11-19 15:27:48,835 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:48,835 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:48,835 main.EasyConfig INFO setting config option toolchain: value {'version': 'dummy', 'name': 'dummy'} | |
| == 2013-11-19 15:27:48,835 main.EasyConfig INFO setting config option name: value CAP3 | |
| == 2013-11-19 15:27:48,836 main.EasyConfig INFO setting config option moduleclass: value bio | |
| == 2013-11-19 15:27:48,836 main.EasyConfig INFO setting config option version: value intel-12-21-2007 | |
| == 2013-11-19 15:27:48,836 main.EasyConfig INFO setting config option source_urls: value ['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'] | |
| == 2013-11-19 15:27:48,836 main.EasyConfig DEBUG Ignoring unknown config option easyblock (value: PackedBinary) | |
| == 2013-11-19 15:27:48,836 main.EasyConfig INFO setting config option homepage: value http://seq.cs.iastate.edu/ | |
| == 2013-11-19 15:27:48,836 main.EasyConfig INFO setting config option description: value CAP3 assembly program | |
| == 2013-11-19 15:27:48,837 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:48,838 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,838 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,838 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,838 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:48,838 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:48,839 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:48,839 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:48,839 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:48,840 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,840 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,840 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:48,841 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:48,841 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:48,841 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:48,841 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:48,841 main.EasyConfig INFO Validating easy block | |
| == 2013-11-19 15:27:48,841 main.EasyConfig INFO Checking OS dependencies | |
| == 2013-11-19 15:27:48,842 main.EasyConfig INFO OS dependencies ok: [] | |
| == 2013-11-19 15:27:48,842 main.EasyConfig INFO Checking skipsteps | |
| == 2013-11-19 15:27:48,842 main.EasyConfig INFO Checking build option lists | |
| == 2013-11-19 15:27:48,842 main.EasyConfig INFO Checking licenses | |
| == 2013-11-19 15:27:48,842 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: Mandatory license not enforced | |
| == 2013-11-19 15:27:48,842 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x234b790> (eb_ns: False) | |
| == 2013-11-19 15:27:48,843 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme', 'JustAppNameAndVersion'] | |
| == 2013-11-19 15:27:48,843 main.module_generator DEBUG Module name CAP3/intel-12-21-2007 validated | |
| == 2013-11-19 15:27:48,843 main.module_generator DEBUG Obtained module name CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:48,845 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgmvapich2 | |
| == 2013-11-19 15:27:48,847 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gmacml | |
| == 2013-11-19 15:27:48,849 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gcc | |
| == 2013-11-19 15:27:48,849 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gmvolf | |
| == 2013-11-19 15:27:48,849 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgmpich | |
| == 2013-11-19 15:27:48,850 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.iiqmpi | |
| == 2013-11-19 15:27:48,850 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.dummy | |
| == 2013-11-19 15:27:48,851 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.goalf | |
| == 2013-11-19 15:27:48,851 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.goolf | |
| == 2013-11-19 15:27:48,851 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gmpolf | |
| == 2013-11-19 15:27:48,852 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgoolf | |
| == 2013-11-19 15:27:48,852 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gqacml | |
| == 2013-11-19 15:27:48,852 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.ictce | |
| == 2013-11-19 15:27:48,853 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gompi | |
| == 2013-11-19 15:27:48,853 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgompi | |
| == 2013-11-19 15:27:48,853 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.ismkl | |
| == 2013-11-19 15:27:48,854 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gmvapich2 | |
| == 2013-11-19 15:27:48,854 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.iccifort | |
| == 2013-11-19 15:27:48,854 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.iqacml | |
| == 2013-11-19 15:27:48,854 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gmpich2 | |
| == 2013-11-19 15:27:48,855 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.impmkl | |
| == 2013-11-19 15:27:48,855 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gcccuda | |
| == 2013-11-19 15:27:48,855 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.clanggcc | |
| == 2013-11-19 15:27:48,855 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgmpolf | |
| == 2013-11-19 15:27:48,856 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.iomkl | |
| == 2013-11-19 15:27:48,856 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.goolfc | |
| == 2013-11-19 15:27:48,856 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.gimkl | |
| == 2013-11-19 15:27:48,857 main.tools.utilities.<module> DEBUG importing module easybuild.toolchains.cgmvolf | |
| == 2013-11-19 15:27:48,857 main.search_toolchain.search_toolchain DEBUG Adding ClangGcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,857 main.search_toolchain.search_toolchain DEBUG Adding Mvapich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Found constant CLANGGCC ('ClangGCC') in module easybuild.toolchains.clanggcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Found constant MVAPICH2 ('MVAPICH2') in module easybuild.toolchains.mpi.mvapich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Adding Acml to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,858 main.search_toolchain.search_toolchain DEBUG Adding Mvapich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Found constant MVAPICH2 ('MVAPICH2') in module easybuild.toolchains.mpi.mvapich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,859 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Adding Mvapich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,860 main.search_toolchain.search_toolchain DEBUG Found constant MVAPICH2 ('MVAPICH2') in module easybuild.toolchains.mpi.mvapich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Adding ClangGcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Adding Mpich to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Found constant CLANGGCC ('ClangGCC') in module easybuild.toolchains.clanggcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Found constant MPICH ('MPICH') in module easybuild.toolchains.mpi.mpich, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_MPICH ('MPI_TYPE_MPICH') in module easybuild.toolchains.mpi.mpich, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,861 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Adding QLogicMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Found constant QLOGICMPI ('QLogicMPI') in module easybuild.toolchains.mpi.qlogicmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Adding Atlas to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,862 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,863 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,864 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Adding Mpich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Found constant MPICH2 ('MPICH2') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,865 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_MPICH ('MPI_TYPE_MPICH') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding Cgompi to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding Acml to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,866 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Adding QLogicMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Found constant QLOGICMPI ('QLogicMPI') in module easybuild.toolchains.mpi.qlogicmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,867 main.search_toolchain.search_toolchain DEBUG Adding IntelFFTW to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Adding IntelMKL to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Adding IntelMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,868 main.search_toolchain.search_toolchain DEBUG Found constant INTELMPI ('IntelMPI') in module easybuild.toolchains.mpi.intelmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,869 main.search_toolchain.search_toolchain DEBUG Adding ClangGcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Found constant CLANGGCC ('ClangGCC') in module easybuild.toolchains.clanggcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Adding IntelFFTW to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,870 main.search_toolchain.search_toolchain DEBUG Adding IntelMKL to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Adding Mpich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Found constant MPICH2 ('MPICH2') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_MPICH ('MPI_TYPE_MPICH') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,871 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Adding Mvapich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Found constant MVAPICH2 ('MVAPICH2') in module easybuild.toolchains.mpi.mvapich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Adding Acml to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,872 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Adding QLogicMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.acml, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,873 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Found constant QLOGICMPI ('QLogicMPI') in module easybuild.toolchains.mpi.qlogicmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Adding Mpich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Found constant MPICH2 ('MPICH2') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_MPICH ('MPI_TYPE_MPICH') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,874 main.search_toolchain.search_toolchain DEBUG Adding IntelFFTW to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Adding IntelMKL to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Adding Mpich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,875 main.search_toolchain.search_toolchain DEBUG Found constant MPICH2 ('MPICH2') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_MPICH ('MPI_TYPE_MPICH') in module easybuild.toolchains.mpi.mpich2, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Adding Cuda to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Found constant CUDA ('CUDA') in module easybuild.toolchains.compiler.cuda, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Adding Clang to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,876 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Adding Cgmpich to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,877 main.search_toolchain.search_toolchain DEBUG Adding IntelFFTW to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Adding IntelIccIfort to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Adding IntelMKL to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.compiler.inteliccifort, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,878 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Adding GccCUDA to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Adding OpenMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,879 main.search_toolchain.search_toolchain DEBUG Found constant MPI_TYPE_OPENMPI ('MPI_TYPE_OPENMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Found constant OPENMPI ('OpenMPI') in module easybuild.toolchains.mpi.openmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Adding Gcc to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Adding IntelFFTW to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Adding IntelMKL to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Adding IntelMPI to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.compiler.gcc, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,880 main.search_toolchain.search_toolchain DEBUG Found constant GCC ('GCC') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Found constant INTELCOMP ('Intel') in module easybuild.toolchains.linalg.intelmkl, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Found constant INTELMPI ('IntelMPI') in module easybuild.toolchains.mpi.intelmpi, adding it to easybuild.tools.toolchain | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Adding Cgmvapich2 to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Adding Fftw to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Adding OpenBLAS to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,881 main.search_toolchain.search_toolchain DEBUG Adding ScaLAPACK to list of imported classes used for looking for constants | |
| == 2013-11-19 15:27:48,894 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:48,894 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /import/bc2/soft/centos6/modules/all | |
| == 2013-11-19 15:27:48,894 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,894 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:48,895 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:48,895 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,895 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,895 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,908 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,909 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:48,910 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:48,910 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,911 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,911 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,923 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,924 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,925 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,925 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,937 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,938 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,938 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,939 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,950 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,951 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,952 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,952 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,964 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,965 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,965 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,966 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,977 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,978 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,979 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,979 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/cap3 | |
| == 2013-11-19 15:27:48,991 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:48,992 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:48,992 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:48,993 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,004 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,005 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,006 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,006 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,018 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,019 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,019 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,020 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,031 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,032 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,033 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,033 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,045 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,046 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,046 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,047 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,058 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,059 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,060 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,060 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,072 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,073 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,073 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,074 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,085 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,086 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,087 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,087 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,099 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,100 main.ToolchainOptions DEBUG _add_options: adding options {'precise': (False, 'High precision'), 'verbose': (False, 'Verbose output'), 'pic': (False, 'Use PIC'), 'static': (False, 'Build static library'), 'optarch': (True, 'Enable architecture optimizations'), 'veryloose': (False, 'Very loose precision'), 'strict': (False, 'Strict (highest) precision'), 'unroll': (False, 'Unroll loops'), 'lowopt': (False, 'Low compiler optimizations'), 'shared': (False, 'Build shared library'), 'opt': (False, 'High compiler optimizations'), 'i8': (False, 'Integers are 8 byte integers'), 'loose': (False, 'Loose precision'), 'cstd': (None, 'Specify C standard'), 'defaultprec': (False, 'Default precision'), 'openmp': (False, 'Enable OpenMP'), 'noopt': (False, 'Disable compiler optimizations'), 'packed-linker-options': (False, 'Pack the linker options as comma separated list'), 'r8': (False, 'Real is 8 byte real'), 'cciscxx': (False, 'Use CC as CXX'), '32bit': (False, 'Compile 32bit target'), 'debug': (False, 'Enable debug'), 'defaultopt': (False, 'Default compiler optimizations')} | |
| == 2013-11-19 15:27:49,102 main.Dummy DEBUG _compiler_set_options: compiler toolchain options {'precise': False, 'verbose': False, 'pic': False, 'static': False, 'optarch': True, 'veryloose': False, 'strict': False, 'unroll': False, 'lowopt': False, 'shared': False, 'opt': False, 'i8': False, 'loose': False, 'cstd': None, 'defaultprec': False, 'openmp': False, 'noopt': False, 'packed-linker-options': False, 'r8': False, 'cciscxx': False, '32bit': False, 'debug': False, 'defaultopt': False} | |
| == 2013-11-19 15:27:49,104 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/import/bc2/soft/centos6/modules/all', '/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:49,105 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /import/bc2/soft/centos6/modules/all | |
| == 2013-11-19 15:27:49,105 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,106 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:49,106 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:49,107 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,107 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,108 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,120 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,121 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:49,122 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:49,122 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,123 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,123 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,135 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,136 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,136 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,137 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,148 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,149 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,150 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,150 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,162 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,162 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,163 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,163 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,175 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,176 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,177 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,177 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,189 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,190 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,190 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,191 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,202 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,203 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,204 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,204 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,216 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,217 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,217 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,218 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,229 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,230 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,231 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,231 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,243 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,244 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,244 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,245 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,256 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,257 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,258 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,258 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,270 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,271 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,271 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,272 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,283 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,284 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,285 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,285 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,297 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,298 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,298 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,299 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,310 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,311 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,312 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,312 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python --terse avail CAP3/intel-12-21-2007' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,359 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,360 main.EnvironmentModulesC DEBUG 'module available CAP3/intel-12-21-2007' gave 0 answers: [] | |
| == 2013-11-19 15:27:49,361 main DEBUG CAP3/intel-12-21-2007 is not installed yet, so retaining it | |
| == 2013-11-19 15:27:49,361 main INFO resolving dependencies ... | |
| == 2013-11-19 15:27:49,363 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/import/bc2/soft/centos6/modules/all', '/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:49,364 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /import/bc2/soft/centos6/modules/all | |
| == 2013-11-19 15:27:49,364 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,365 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:49,365 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:49,365 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,365 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,366 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,377 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,378 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:49,379 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:49,379 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,380 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,380 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,392 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,393 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,393 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,394 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,405 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,406 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,407 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,407 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,419 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,420 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,420 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,421 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,433 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,434 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,434 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,435 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,447 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,448 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,448 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,449 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,461 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,462 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,462 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,463 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,474 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,475 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,476 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,476 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,488 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,489 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,489 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,490 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,501 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,502 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,503 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,503 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,515 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,516 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,516 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,517 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,529 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,529 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,530 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,530 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,542 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,543 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,543 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,544 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,556 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,556 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,557 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,557 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,569 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,570 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,571 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,571 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python --terse avail ' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,662 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,665 main.EnvironmentModulesC DEBUG 'module available ' gave 69 answers: ['ATLAS/3.10.1', 'BLACS/1.1', 'BLAST/2.2.28', 'BWA/0.7.4', 'BamTools/2.2.3', 'Boost/1.47.0', 'Boost/1.49.0', 'Boost/1.51.0', 'Boost/1.53.0', 'Bowtie/1.0.0', 'Bowtie2/2.0.2', 'CMake/2.8.12', 'CMake/2.8.4', 'Cufflinks/2.0.2', 'ELinks/0.12pre5', 'EasyBuild/1.8.2', 'EasyBuild/1.9.0', 'Eigen/2.0.17', 'Eigen/3.1.4', 'FASTX-Toolkit/0.0.13.2', 'FFTW/3.3.3', 'GCC/4.5.3', 'GCC/4.6.3', 'GCC/4.7.3', 'GCC/4.8.1', 'GLib/2.34.3', 'GROMACS/4.6.1', 'JUnit/4.11', 'Java/1.7.0_21', 'LAPACK/3.4.2', 'OpenBLAS/0.2.6', 'OpenBabel/2.3.2', 'OpenMPI/1.6.5', 'Perl/5.16.3', 'Python/2.7.5', 'Python/3.2.3', 'Python/default', 'Qt/4.8.5', 'R/3.0.1', 'SAMtools/0.1.18', 'SOAPdenovo/1.05', 'ScaLAPACK/2.0.2', 'Schrodinger_Suite/2013-3', 'TopHat/2.0.4', 'TopHat/2.0.8', 'Trinity/2013-02-25', 'Velvet/1.2.09', 'ant/1.9.0', 'bbFTP/3.2.0', 'bbftpPRO/9.3.1', 'biodeps/1.6', 'bzip2/1.0.6', 'cURL/7.29.0', 'expat/2.1.0', 'gettext/0.18.2', 'git/1.8.2', 'goalf/1.5.12', 'gompi/1.5.12', 'goolf/1.4.10', 'libffi/3.0.13', 'libgtextutils/0.6.1', 'libpng/1.6.2', 'libreadline/6.2', 'libxml2/2.9.1', 'ncurses/5.9', 'picard/1.100', 'picard/1.102', 'zlib/1.2.7', 'zlib/1.2.8'] | |
| == 2013-11-19 15:27:49,666 main DEBUG unprocessed before resolving deps: [{'unresolved_deps': [], 'module': 'CAP3/intel-12-21-2007', 'dependencies': [], 'ec': <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x234b790>, 'spec': '/tmp/cap3/CAP3-intel.eb', 'builddependencies': []}] | |
| == 2013-11-19 15:27:49,666 main DEBUG Adding easyconfig /tmp/cap3/CAP3-intel.eb to final list | |
| == 2013-11-19 15:27:49,666 main DEBUG unprocessed after resolving deps: [] | |
| == 2013-11-19 15:27:49,667 main INFO Dependency resolution complete, building as follows: | |
| [{'unresolved_deps': [], 'module': 'CAP3/intel-12-21-2007', 'dependencies': [], 'ec': <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x234b790>, 'spec': '/tmp/cap3/CAP3-intel.eb', 'builddependencies': []}] | |
| == 2013-11-19 15:27:49,667 main INFO processing EasyBuild easyconfig /tmp/cap3/CAP3-intel.eb | |
| == 2013-11-19 15:27:49,668 main INFO Resetting environment | |
| == 2013-11-19 15:27:49,672 main.easyblock.<module> INFO Derived full easyblock module path for PackedBinary: easybuild.easyblocks.generic.packedbinary | |
| == 2013-11-19 15:27:49,672 main.easyblock.<module> INFO Successfully obtained PackedBinary class instance from easybuild.easyblocks.generic.packedbinary | |
| == 2013-11-19 15:27:49,674 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/import/bc2/soft/centos6/modules/all', '/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:49,674 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /import/bc2/soft/centos6/modules/all | |
| == 2013-11-19 15:27:49,675 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,675 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:49,675 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:49,675 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,675 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,676 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,685 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,686 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:49,686 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:49,687 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,687 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,688 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,699 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,700 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,701 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,701 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,713 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,713 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,714 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,714 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,726 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,727 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,728 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,728 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,740 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,741 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,741 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,742 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,753 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,754 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,755 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,755 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,767 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,768 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,768 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,769 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,780 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,781 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,782 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,782 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,794 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,795 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,795 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,796 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,807 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,808 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,809 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,809 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,821 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,822 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,822 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,823 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,834 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,835 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,836 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,836 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,848 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,849 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,849 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,850 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,861 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,862 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,863 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,863 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,875 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,877 main.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis', 'geo', 'lang', 'toolchain'] | |
| == 2013-11-19 15:27:49,879 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: _legacy_license does not have to be checked | |
| == 2013-11-19 15:27:49,880 main.EasyConfig DEBUG List of valid stops obtained: ['fetch', 'ready', 'source', 'patch', 'prepare', 'configure', 'build', 'test', 'install', 'extensions', 'package', 'postproc', 'sanitycheck', 'cleanup', 'module', 'testcases'] | |
| == 2013-11-19 15:27:49,881 main.EasyConfigParser DEBUG Process filename /tmp/cap3/CAP3-intel.eb with get function (<function read_file at 0x1f0a230>, ('/tmp/cap3/CAP3-intel.eb',)), set function (<function write_file at 0x1f0a2a8>, ('/tmp/cap3/CAP3-intel.eb', None)) | |
| == 2013-11-19 15:27:49,882 main.EasyConfigParser DEBUG No version found, using default 1.0 | |
| == 2013-11-19 15:27:49,884 main.FormatOneZero DEBUG No section found. | |
| == 2013-11-19 15:27:49,885 main.FormatOneZero DEBUG Found header | |
| == 2013-11-19 15:27:49,885 main.easyconfig.format.pyheaderconfigobj WARNING Deprecated functionality, will no longer work in v2.0: Magic 'global' easyconfigs variables like shared_lib_ext should no longer be used | |
| == 2013-11-19 15:27:49,885 main.FormatOneZero DEBUG pyheader initial global_vars {'OS_NAME': 'centos', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x2006150>, 'GPLv2': <easybuild.framework.easyconfig.licenses.License_GPLv2 object at 0x2006250>, 'GPLv3': <easybuild.framework.easyconfig.licenses.License_GPLv3 object at 0x2006210>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCE_TAR': '%(name)s-%(version)s.tar', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'SYS_PYTHON_VERSION': '2.6.6', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(name)s', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '6.4', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'OS_TYPE': 'Linux'} | |
| == 2013-11-19 15:27:49,886 main.FormatOneZero DEBUG pyheader initial local_vars {} | |
| == 2013-11-19 15:27:49,886 main.FormatOneZero DEBUG pyheader text being exec'ed: name = 'CAP3' | |
| version = 'intel-12-21-2007' | |
| easyblock = 'PackedBinary' | |
| homepage = 'http://seq.cs.iastate.edu/' | |
| description = """CAP3 assembly program """ | |
| toolchain = {'name': 'dummy', 'version': 'dummy'} | |
| source_urls = [('http://seq.cs.iastate.edu/CAP3/cap3.linux.tar')] | |
| #sources = ['cap3.linux.tar'] | |
| moduleclass = 'bio' | |
| == 2013-11-19 15:27:49,886 main.FormatOneZero DEBUG pyheader final global_vars {'OS_NAME': 'centos', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x2006150>, 'GPLv2': <easybuild.framework.easyconfig.licenses.License_GPLv2 object at 0x2006250>, 'GPLv3': <easybuild.framework.easyconfig.licenses.License_GPLv3 object at 0x2006210>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCE_TAR': '%(name)s-%(version)s.tar', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'SYS_PYTHON_VERSION': '2.6.6', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(name)s', '__builtins__': {'bytearray': <type 'bytearray'>, 'IndexError': <type 'exceptions.IndexError'>, 'all': <built-in function all>, 'help': Type help() for interactive help, or help(object) for help about object., 'vars': <built-in function vars>, 'SyntaxError': <type 'exceptions.SyntaxError'>, 'unicode': <type 'unicode'>, 'UnicodeDecodeError': <type 'exceptions.UnicodeDecodeError'>, 'isinstance': <built-in function isinstance>, 'copyright': Copyright (c) 2001-2010 Python Software Foundation. | |
| All Rights Reserved. | |
| Copyright (c) 2000 BeOpen.com. | |
| All Rights Reserved. | |
| Copyright (c) 1995-2001 Corporation for National Research Initiatives. | |
| All Rights Reserved. | |
| Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam. | |
| All Rights Reserved., 'NameError': <type 'exceptions.NameError'>, 'BytesWarning': <type 'exceptions.BytesWarning'>, 'dict': <type 'dict'>, 'input': <built-in function input>, 'oct': <built-in function oct>, 'bin': <built-in function bin>, 'SystemExit': <type 'exceptions.SystemExit'>, 'StandardError': <type 'exceptions.StandardError'>, 'format': <built-in function format>, 'repr': <built-in function repr>, 'sorted': <built-in function sorted>, 'False': False, 'RuntimeWarning': <type 'exceptions.RuntimeWarning'>, 'list': <type 'list'>, 'iter': <built-in function iter>, 'reload': <built-in function reload>, 'Warning': <type 'exceptions.Warning'>, '__package__': None, 'round': <built-in function round>, 'dir': <built-in function dir>, 'cmp': <built-in function cmp>, 'set': <type 'set'>, 'bytes': <type 'str'>, 'reduce': <built-in function reduce>, 'intern': <built-in function intern>, 'issubclass': <built-in function issubclass>, 'Ellipsis': Ellipsis, 'EOFError': <type 'exceptions.EOFError'>, 'locals': <built-in function locals>, 'BufferError': <type 'exceptions.BufferError'>, 'slice': <type 'slice'>, 'FloatingPointError': <type 'exceptions.FloatingPointError'>, 'sum': <built-in function sum>, 'getattr': <built-in function getattr>, 'abs': <built-in function abs>, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'print': <built-in function print>, 'True': True, 'FutureWarning': <type 'exceptions.FutureWarning'>, 'ImportWarning': <type 'exceptions.ImportWarning'>, 'None': None, 'hash': <built-in function hash>, 'ReferenceError': <type 'exceptions.ReferenceError'>, 'len': <built-in function len>, 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands | |
| for supporting Python development. See www.python.org for more information., 'frozenset': <type 'frozenset'>, '__name__': '__builtin__', 'ord': <built-in function ord>, 'super': <type 'super'>, 'TypeError': <type 'exceptions.TypeError'>, 'license': See http://www.python.org/2.6/license.html, 'KeyboardInterrupt': <type 'exceptions.KeyboardInterrupt'>, 'UserWarning': <type 'exceptions.UserWarning'>, 'filter': <built-in function filter>, 'range': <built-in function range>, 'staticmethod': <type 'staticmethod'>, 'SystemError': <type 'exceptions.SystemError'>, 'BaseException': <type 'exceptions.BaseException'>, 'pow': <built-in function pow>, 'RuntimeError': <type 'exceptions.RuntimeError'>, 'float': <type 'float'>, 'MemoryError': <type 'exceptions.MemoryError'>, 'StopIteration': <type 'exceptions.StopIteration'>, 'globals': <built-in function globals>, 'divmod': <built-in function divmod>, 'enumerate': <type 'enumerate'>, 'apply': <built-in function apply>, 'LookupError': <type 'exceptions.LookupError'>, 'open': <built-in function open>, 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'basestring': <type 'basestring'>, 'UnicodeError': <type 'exceptions.UnicodeError'>, 'zip': <built-in function zip>, 'hex': <built-in function hex>, 'long': <type 'long'>, 'next': <built-in function next>, 'ImportError': <type 'exceptions.ImportError'>, 'chr': <built-in function chr>, 'xrange': <type 'xrange'>, 'type': <type 'type'>, '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", 'Exception': <type 'exceptions.Exception'>, 'tuple': <type 'tuple'>, 'UnicodeTranslateError': <type 'exceptions.UnicodeTranslateError'>, 'reversed': <type 'reversed'>, 'UnicodeEncodeError': <type 'exceptions.UnicodeEncodeError'>, 'IOError': <type 'exceptions.IOError'>, 'hasattr': <built-in function hasattr>, 'delattr': <built-in function delattr>, 'setattr': <built-in function setattr>, 'raw_input': <built-in function raw_input>, 'SyntaxWarning': <type 'exceptions.SyntaxWarning'>, 'compile': <built-in function compile>, 'ArithmeticError': <type 'exceptions.ArithmeticError'>, 'str': <type 'str'>, 'property': <type 'property'>, 'GeneratorExit': <type 'exceptions.GeneratorExit'>, 'int': <type 'int'>, '__import__': <built-in function __import__>, 'KeyError': <type 'exceptions.KeyError'>, 'coerce': <built-in function coerce>, 'PendingDeprecationWarning': <type 'exceptions.PendingDeprecationWarning'>, 'file': <type 'file'>, 'EnvironmentError': <type 'exceptions.EnvironmentError'>, 'unichr': <built-in function unichr>, 'id': <built-in function id>, 'OSError': <type 'exceptions.OSError'>, 'DeprecationWarning': <type 'exceptions.DeprecationWarning'>, 'min': <built-in function min>, 'UnicodeWarning': <type 'exceptions.UnicodeWarning'>, 'execfile': <built-in function execfile>, 'any': <built-in function any>, 'complex': <type 'complex'>, 'bool': <type 'bool'>, 'ValueError': <type 'exceptions.ValueError'>, 'NotImplemented': NotImplemented, 'map': <built-in function map>, 'buffer': <type 'buffer'>, 'max': <built-in function max>, 'object': <type 'object'>, 'TabError': <type 'exceptions.TabError'>, 'callable': <built-in function callable>, 'ZeroDivisionError': <type 'exceptions.ZeroDivisionError'>, 'eval': <built-in function eval>, '__debug__': True, 'IndentationError': <type 'exceptions.IndentationError'>, 'AssertionError': <type 'exceptions.AssertionError'>, 'classmethod': <type 'classmethod'>, 'UnboundLocalError': <type 'exceptions.UnboundLocalError'>, 'NotImplementedError': <type 'exceptions.NotImplementedError'>, 'AttributeError': <type 'exceptions.AttributeError'>, 'OverflowError': <type 'exceptions.OverflowError'>}, 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '6.4', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'OS_TYPE': 'Linux'} | |
| == 2013-11-19 15:27:49,887 main.FormatOneZero DEBUG pyheader final local_vars {'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'CAP3', 'moduleclass': 'bio', 'version': 'intel-12-21-2007', 'source_urls': ['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'easyblock': 'PackedBinary', 'homepage': 'http://seq.cs.iastate.edu/', 'description': 'CAP3 assembly program '} | |
| == 2013-11-19 15:27:49,887 main.FormatOneZero DEBUG No docstring found in local_vars | |
| == 2013-11-19 15:27:49,888 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: _legacy_license does not have to be checked | |
| == 2013-11-19 15:27:49,888 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': [None, 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': [None, 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': [None, 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['base', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': [None, 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,889 main.easyconfig.templates DEBUG name: name, config: None | |
| == 2013-11-19 15:27:49,890 main.easyconfig.templates DEBUG name: version, config: None | |
| == 2013-11-19 15:27:49,890 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,890 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,891 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': [None, 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': [None, 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': [None, 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['base', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': [None, 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,892 main.easyconfig.templates DEBUG name: name, config: None | |
| == 2013-11-19 15:27:49,892 main.easyconfig.templates DEBUG name: version, config: None | |
| == 2013-11-19 15:27:49,892 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,892 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,892 main.EasyConfig INFO setting config option toolchain: value {'version': 'dummy', 'name': 'dummy'} | |
| == 2013-11-19 15:27:49,893 main.EasyConfig INFO setting config option name: value CAP3 | |
| == 2013-11-19 15:27:49,893 main.EasyConfig INFO setting config option moduleclass: value bio | |
| == 2013-11-19 15:27:49,893 main.EasyConfig INFO setting config option version: value intel-12-21-2007 | |
| == 2013-11-19 15:27:49,893 main.EasyConfig INFO setting config option source_urls: value ['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'] | |
| == 2013-11-19 15:27:49,893 main.EasyConfig DEBUG Ignoring unknown config option easyblock (value: PackedBinary) | |
| == 2013-11-19 15:27:49,894 main.EasyConfig INFO setting config option homepage: value http://seq.cs.iastate.edu/ | |
| == 2013-11-19 15:27:49,894 main.EasyConfig INFO setting config option description: value CAP3 assembly program | |
| == 2013-11-19 15:27:49,895 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,896 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,896 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,896 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,896 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,897 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,897 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,897 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,898 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,899 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,899 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,899 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,899 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,900 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,900 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,900 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,900 main.EasyConfig INFO Validating easy block | |
| == 2013-11-19 15:27:49,900 main.EasyConfig INFO Checking OS dependencies | |
| == 2013-11-19 15:27:49,901 main.EasyConfig INFO OS dependencies ok: [] | |
| == 2013-11-19 15:27:49,901 main.EasyConfig INFO Checking skipsteps | |
| == 2013-11-19 15:27:49,901 main.EasyConfig INFO Checking build option lists | |
| == 2013-11-19 15:27:49,901 main.EasyConfig INFO Checking licenses | |
| == 2013-11-19 15:27:49,901 main.EasyConfig WARNING Deprecated functionality, will no longer work in v2.0: Mandatory license not enforced | |
| == 2013-11-19 15:27:49,903 main.PackedBinary INFO This is EasyBuild 1.9.0 (framework: 1.9.0, easyblocks: 1.9.0) on host login11. | |
| == 2013-11-19 15:27:49,904 main.PackedBinary INFO Init completed for application name CAP3 version intel-12-21-2007 | |
| == 2013-11-19 15:27:49,904 main INFO Obtained application instance of for CAP3 (easyblock: PackedBinary) | |
| == 2013-11-19 15:27:49,904 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x23af350> (eb_ns: False) | |
| == 2013-11-19 15:27:49,904 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme', 'JustAppNameAndVersion'] | |
| == 2013-11-19 15:27:49,905 main.module_generator DEBUG Module name CAP3/intel-12-21-2007 validated | |
| == 2013-11-19 15:27:49,906 main.module_generator DEBUG Obtained module name CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:49,906 main.PackedBinary INFO building and installing CAP3/intel-12-21-2007... | |
| == 2013-11-19 15:27:49,906 main.PackedBinary INFO fetching files... | |
| == 2013-11-19 15:27:49,906 main.PackedBinary INFO Starting fetch step | |
| == 2013-11-19 15:27:49,907 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,909 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,909 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,909 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,910 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,910 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,910 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,911 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,911 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,913 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,913 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,913 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,914 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,914 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,914 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,915 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,915 main.PackedBinary INFO Running method fetch_step part of step fetch | |
| == 2013-11-19 15:27:49,915 main.PackedBinary WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2013-11-19 15:27:49,915 main.PackedBinary INFO no sources provided | |
| == 2013-11-19 15:27:49,916 main.PackedBinary INFO no patches provided | |
| == 2013-11-19 15:27:49,918 main.affinity.<module> DEBUG sched_getaffinity for pid 28071 returned cpuset 0-15 | |
| == 2013-11-19 15:27:49,919 main.filetools DEBUG run_cmd: running cmd ulimit -u (in /tmp/cap3) | |
| == 2013-11-19 15:27:49,925 main.filetools DEBUG cmd "ulimit -u" exited with exitcode 0 and output: | |
| 1024 | |
| == 2013-11-19 15:27:49,925 main.filetools DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2013-11-19 15:27:49,926 main.PackedBinary INFO Setting parallelism: 16 | |
| == 2013-11-19 15:27:49,926 main.PackedBinary INFO Checking dirs that need to be created: ['/import/bc2/soft/centos6/software/CAP3', '/import/bc2/soft/centos6/modules/all/CAP3', '/import/bc2/soft/centos6/modules/bio/CAP3'] | |
| == 2013-11-19 15:27:49,927 main.PackedBinary DEBUG Not creating /import/bc2/soft/centos6/software/CAP3, it already exists. | |
| == 2013-11-19 15:27:49,927 main.PackedBinary DEBUG Not creating /import/bc2/soft/centos6/modules/all/CAP3, it already exists. | |
| == 2013-11-19 15:27:49,928 main.PackedBinary DEBUG Not creating /import/bc2/soft/centos6/modules/bio/CAP3, it already exists. | |
| == 2013-11-19 15:27:49,928 main.PackedBinary INFO creating build dir, resetting environment... | |
| == 2013-11-19 15:27:49,929 main.PackedBinary INFO Starting ready step | |
| == 2013-11-19 15:27:49,930 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,933 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,933 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,934 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,934 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,935 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,935 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,935 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,936 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:49,938 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,938 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,938 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:49,939 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:49,939 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:49,939 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:49,939 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:49,940 main.PackedBinary INFO Running method check_readiness_step part of step ready | |
| == 2013-11-19 15:27:49,940 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,940 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,941 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python --terse list' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,949 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,952 main.search_toolchain.search_toolchain DEBUG Skipping importing of toolchain modules, processing of toolchain constants is already done. | |
| == 2013-11-19 15:27:49,959 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/import/bc2/soft/centos6/modules/all', '/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:49,959 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /import/bc2/soft/centos6/modules/all | |
| == 2013-11-19 15:27:49,960 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,961 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:49,961 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:49,962 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,962 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,963 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,976 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,977 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:49,977 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:49,978 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,979 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,979 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/cap3 | |
| == 2013-11-19 15:27:49,991 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:49,992 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:49,993 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:49,993 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,005 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,006 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,007 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,007 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,019 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,020 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,021 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,022 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,033 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,034 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,035 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,036 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,048 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,049 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,049 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,050 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,062 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,063 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,063 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,064 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,076 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,077 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,078 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,078 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,090 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,091 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,092 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,092 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,104 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,105 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,106 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,106 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,118 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,119 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,120 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,121 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,133 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,134 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,134 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,135 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,147 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,148 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,148 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,149 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,161 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,162 main.EnvironmentModulesC DEBUG Current MODULEPATH: /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,163 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,163 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/cap3 | |
| == 2013-11-19 15:27:50,175 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,176 main.ToolchainOptions DEBUG _add_options: adding options {'precise': (False, 'High precision'), 'verbose': (False, 'Verbose output'), 'pic': (False, 'Use PIC'), 'static': (False, 'Build static library'), 'optarch': (True, 'Enable architecture optimizations'), 'veryloose': (False, 'Very loose precision'), 'strict': (False, 'Strict (highest) precision'), 'unroll': (False, 'Unroll loops'), 'lowopt': (False, 'Low compiler optimizations'), 'shared': (False, 'Build shared library'), 'opt': (False, 'High compiler optimizations'), 'i8': (False, 'Integers are 8 byte integers'), 'loose': (False, 'Loose precision'), 'cstd': (None, 'Specify C standard'), 'defaultprec': (False, 'Default precision'), 'openmp': (False, 'Enable OpenMP'), 'noopt': (False, 'Disable compiler optimizations'), 'packed-linker-options': (False, 'Pack the linker options as comma separated list'), 'r8': (False, 'Real is 8 byte real'), 'cciscxx': (False, 'Use CC as CXX'), '32bit': (False, 'Compile 32bit target'), 'debug': (False, 'Enable debug'), 'defaultopt': (False, 'Default compiler optimizations')} | |
| == 2013-11-19 15:27:50,178 main.Dummy DEBUG _compiler_set_options: compiler toolchain options {'precise': False, 'verbose': False, 'pic': False, 'static': False, 'optarch': True, 'veryloose': False, 'strict': False, 'unroll': False, 'lowopt': False, 'shared': False, 'opt': False, 'i8': False, 'loose': False, 'cstd': None, 'defaultprec': False, 'openmp': False, 'noopt': False, 'packed-linker-options': False, 'r8': False, 'cciscxx': False, '32bit': False, 'debug': False, 'defaultopt': False} | |
| == 2013-11-19 15:27:50,178 main.Dummy DEBUG add_dependencies: adding toolchain dependencies [] | |
| == 2013-11-19 15:27:50,179 main.PackedBinary INFO Running method gen_installdir part of step ready | |
| == 2013-11-19 15:27:50,180 main.PackedBinary INFO Running method make_builddir part of step ready | |
| == 2013-11-19 15:27:50,181 main.PackedBinary DEBUG Creating the build directory /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy (cleanup: True) | |
| == 2013-11-19 15:27:50,181 main.PackedBinary INFO Found old directory /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,182 main.filetools INFO Path /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy successfully removed. | |
| == 2013-11-19 15:27:50,182 main.PackedBinary INFO Removed old directory /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,183 main.PackedBinary INFO Running method env_reset_changes part of step ready | |
| == 2013-11-19 15:27:50,184 main.PackedBinary INFO Running method handle_iterate_opts part of step ready | |
| == 2013-11-19 15:27:50,184 main.PackedBinary INFO unpacking... | |
| == 2013-11-19 15:27:50,185 main.PackedBinary INFO Starting source step | |
| == 2013-11-19 15:27:50,186 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,187 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,188 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,188 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,188 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,189 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,189 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,189 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,190 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,191 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,192 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,192 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,192 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,193 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,193 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,193 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,193 main.PackedBinary INFO Running method checksum_step part of step source | |
| == 2013-11-19 15:27:50,194 main.PackedBinary INFO Running method extract_step part of step source | |
| == 2013-11-19 15:27:50,194 main.PackedBinary INFO patching... | |
| == 2013-11-19 15:27:50,194 main.PackedBinary INFO Starting patch step | |
| == 2013-11-19 15:27:50,195 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,196 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,197 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,197 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,197 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,198 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,198 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,198 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,199 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,200 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,201 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,201 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,201 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,202 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,202 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,202 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,202 main.PackedBinary INFO Running method patch_step part of step patch | |
| == 2013-11-19 15:27:50,203 main.PackedBinary INFO preparing... | |
| == 2013-11-19 15:27:50,203 main.PackedBinary INFO Starting prepare step | |
| == 2013-11-19 15:27:50,204 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,205 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,205 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,206 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,206 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,206 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,207 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,207 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,208 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,209 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,209 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,210 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,210 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,210 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,211 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,211 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,211 main.PackedBinary INFO Running method prepare_step part of step prepare | |
| == 2013-11-19 15:27:50,211 main.Dummy DEBUG _toolchain_exists: dummy toolchain always exists, returning True | |
| == 2013-11-19 15:27:50,212 main.Dummy INFO prepare: toolchain dummy mode, dummy version; not loading dependencies | |
| == 2013-11-19 15:27:50,212 main.PackedBinary DEBUG Changed to real build directory /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/ | |
| == 2013-11-19 15:27:50,212 main.PackedBinary INFO configuring... | |
| == 2013-11-19 15:27:50,212 main.PackedBinary INFO Starting configure step | |
| == 2013-11-19 15:27:50,213 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,215 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,215 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,215 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,216 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,216 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,216 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,216 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,217 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,219 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,219 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,219 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,220 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,220 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,220 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,220 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,221 main.PackedBinary INFO Running method configure_step part of step configure | |
| == 2013-11-19 15:27:50,221 main.PackedBinary INFO building... | |
| == 2013-11-19 15:27:50,221 main.PackedBinary INFO Starting build step | |
| == 2013-11-19 15:27:50,222 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,224 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,224 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,224 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,225 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,225 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,225 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,225 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,226 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,228 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,228 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,228 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,229 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,229 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,229 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,229 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,230 main.PackedBinary INFO Running method build_step part of step build | |
| == 2013-11-19 15:27:50,230 main.PackedBinary INFO testing... | |
| == 2013-11-19 15:27:50,230 main.PackedBinary INFO Starting test step | |
| == 2013-11-19 15:27:50,231 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,232 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,233 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,233 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,233 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,234 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,234 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,234 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,235 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,236 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,237 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,237 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,237 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,238 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,238 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,238 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,238 main.PackedBinary INFO Running method test_step part of step test | |
| == 2013-11-19 15:27:50,239 main.PackedBinary INFO installing... | |
| == 2013-11-19 15:27:50,239 main.PackedBinary INFO Starting install step | |
| == 2013-11-19 15:27:50,240 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,241 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,241 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,242 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,242 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,242 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,243 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,243 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,244 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,245 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,245 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,246 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,246 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,246 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,247 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,247 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,247 main.PackedBinary INFO Running method stage_install_step part of step install | |
| == 2013-11-19 15:27:50,247 main.PackedBinary INFO Running method make_installdir part of step install | |
| == 2013-11-19 15:27:50,248 main.PackedBinary DEBUG Creating the installation directory /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 (cleanup: True) | |
| == 2013-11-19 15:27:50,248 main.PackedBinary INFO Found old directory /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,249 main.filetools INFO Path /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 successfully removed. | |
| == 2013-11-19 15:27:50,249 main.PackedBinary INFO Removed old directory /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,250 main.PackedBinary INFO Running method install_step part of step install | |
| == 2013-11-19 15:27:50,250 main.PackedBinary INFO taking care of extensions... | |
| == 2013-11-19 15:27:50,250 main.PackedBinary INFO Starting extensions step | |
| == 2013-11-19 15:27:50,251 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,253 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,253 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,253 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,254 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,254 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,254 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,254 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,255 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,257 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,257 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,257 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,258 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,258 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,258 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,258 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,259 main.PackedBinary INFO Running method extensions_step part of step extensions | |
| == 2013-11-19 15:27:50,259 main.PackedBinary DEBUG No extensions in exts_list | |
| == 2013-11-19 15:27:50,259 main.PackedBinary INFO packaging... | |
| == 2013-11-19 15:27:50,259 main.PackedBinary INFO Starting package step | |
| == 2013-11-19 15:27:50,260 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,262 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,262 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,262 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,263 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,263 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,263 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,263 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,264 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,266 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,266 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,266 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,267 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,267 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,267 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,267 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,268 main.PackedBinary INFO Running method package_step part of step package | |
| == 2013-11-19 15:27:50,268 main.PackedBinary INFO postprocessing... | |
| == 2013-11-19 15:27:50,268 main.PackedBinary INFO Starting postproc step | |
| == 2013-11-19 15:27:50,269 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,271 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,271 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,271 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,271 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,272 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,272 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,272 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,273 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,275 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,275 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,275 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,275 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,276 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,276 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,276 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,277 main.PackedBinary INFO Running method post_install_step part of step postproc | |
| == 2013-11-19 15:27:50,277 main.filetools INFO Adjusting permissions recursively for /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,277 main.PackedBinary INFO Successfully removed write permissions recursively for group/other on install dir. | |
| == 2013-11-19 15:27:50,277 main.PackedBinary INFO sanity checking... | |
| == 2013-11-19 15:27:50,278 main.PackedBinary INFO Starting sanitycheck step | |
| == 2013-11-19 15:27:50,279 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,280 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,280 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,281 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,281 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,281 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,281 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,282 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,283 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [[], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['intel-12-21-2007', 'Version of software', (0, 'mandatory')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://seq.cs.iastate.edu/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['CAP3 assembly program ', 'A short description of the software', (0, 'mandatory')], 'install_cmd': [None, 'Install command to be used.', (1, 'easyblock-specific')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://seq.cs.iastate.edu/CAP3/cap3.linux.tar'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['CAP3', 'Name of software', (0, 'mandatory')], 'license': [None, 'Software license', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')]} | |
| == 2013-11-19 15:27:50,284 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,284 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,285 main.easyconfig.templates DEBUG version found in easyconfig is intel-12-21-2007 | |
| == 2013-11-19 15:27:50,285 main.easyconfig.templates DEBUG name: name, config: CAP3 | |
| == 2013-11-19 15:27:50,285 main.easyconfig.templates DEBUG name: version, config: intel-12-21-2007 | |
| == 2013-11-19 15:27:50,285 main.easyconfig.templates DEBUG name: versionsuffix, config: | |
| == 2013-11-19 15:27:50,286 main.easyconfig.templates DEBUG name: versionprefix, config: | |
| == 2013-11-19 15:27:50,286 main.PackedBinary INFO Running method sanity_check_step part of step sanitycheck | |
| == 2013-11-19 15:27:50,286 main.PackedBinary INFO Using default sanity check paths: {'files': [], 'dirs': ['bin', 'lib']} | |
| == 2013-11-19 15:27:50,286 main.PackedBinary DEBUG Could not find dir bin in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,287 main.PackedBinary WARNING Sanity check: no dir of ('bin',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,287 main.PackedBinary DEBUG Could not find dir lib in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,287 main.PackedBinary WARNING Sanity check: no dir of ('lib',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,288 main.module_generator DEBUG Fake mode: using /scratch/tmpRp2jaJ (instead of /import/bc2/soft/centos6/modules) | |
| == 2013-11-19 15:27:50,288 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x23af350> (eb_ns: False) | |
| == 2013-11-19 15:27:50,288 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme', 'JustAppNameAndVersion'] | |
| == 2013-11-19 15:27:50,290 main.module_generator DEBUG Module name CAP3/intel-12-21-2007 validated | |
| == 2013-11-19 15:27:50,290 main.module_generator DEBUG Obtained module name CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,290 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x23af350> (eb_ns: False) | |
| == 2013-11-19 15:27:50,291 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme', 'JustAppNameAndVersion'] | |
| == 2013-11-19 15:27:50,292 main.module_generator DEBUG Module name CAP3/intel-12-21-2007 validated | |
| == 2013-11-19 15:27:50,292 main.module_generator DEBUG Obtained module name CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,293 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x23af350> (eb_ns: False) | |
| == 2013-11-19 15:27:50,293 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme', 'JustAppNameAndVersion'] | |
| == 2013-11-19 15:27:50,296 main.module_generator DEBUG Module name CAP3/intel-12-21-2007 validated | |
| == 2013-11-19 15:27:50,296 main.module_generator DEBUG Obtained module name CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,297 main.PackedBinary DEBUG make_module_extra added this: | |
| setenv EBROOTCAP3 "$root" | |
| setenv EBVERSIONCAP3 "intel-12-21-2007" | |
| setenv EBDEVELCAP3 "$root/easybuild/CAP3-intel-12-21-2007-easybuild-devel" | |
| == 2013-11-19 15:27:50,297 main.PackedBinary DEBUG make_module_extra added this: | |
| setenv EBROOTCAP3 "$root" | |
| setenv EBVERSIONCAP3 "intel-12-21-2007" | |
| setenv EBDEVELCAP3 "$root/easybuild/CAP3-intel-12-21-2007-easybuild-devel" | |
| prepend-path PATH $root/ | |
| == 2013-11-19 15:27:50,297 main.PackedBinary INFO Added modulefile: /scratch/tmpRp2jaJ/all/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,297 main.PackedBinary DEBUG mod_paths: ['/scratch/tmpRp2jaJ/all', '/import/bc2/soft/centos6/modules/all', '/import/bc2/soft/centos6/modules/vis', '/import/bc2/soft/centos6/modules/tools', '/import/bc2/soft/centos6/modules/toolchain', '/import/bc2/soft/centos6/modules/numlib', '/import/bc2/soft/centos6/modules/mpi', '/import/bc2/soft/centos6/modules/math', '/import/bc2/soft/centos6/modules/lib', '/import/bc2/soft/centos6/modules/lang', '/import/bc2/soft/centos6/modules/devel', '/import/bc2/soft/centos6/modules/compiler', '/import/bc2/soft/centos6/modules/chem', '/import/bc2/soft/centos6/modules/bio', '/import/bc2/soft/centos6/modules/base', '/import/bc2/soft/centos6/software/modulefiles/Linux', '/import/bc2/soft/centos6/software/modulefiles/Core', '/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core'] | |
| == 2013-11-19 15:27:50,299 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,299 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:50,299 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:50,299 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,300 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,300 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,311 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,312 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:50,312 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:50,312 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,313 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,313 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,325 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,326 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,326 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,327 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,339 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,340 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,341 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,341 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,353 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,354 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,355 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,355 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,367 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,368 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,369 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,370 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,381 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,382 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,383 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,384 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,396 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,397 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,397 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,398 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,410 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,411 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,411 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,412 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,424 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,425 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,426 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,426 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,438 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,439 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,440 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,440 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,452 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,453 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,454 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,454 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,467 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,468 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,468 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,469 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,481 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,482 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,482 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,483 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,495 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,496 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,497 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,497 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,509 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,510 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,511 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,511 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /scratch/tmpRp2jaJ/all' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,523 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,524 main.EnvironmentModulesC DEBUG List of loaded modules before purge: None | |
| == 2013-11-19 15:27:50,524 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,525 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,526 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python purge ' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,535 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,537 main.environment DEBUG Key in new environment found that is different from old one: MODULEPATH (/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core) | |
| == 2013-11-19 15:27:50,537 main.environment INFO Environment variable MODULEPATH set to /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,538 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,539 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,539 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,540 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python load CAP3/intel-12-21-2007' from /tmp/easybuild/CAP3/intel-12-21-2007/dummy-dummy | |
| == 2013-11-19 15:27:50,559 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,560 main.PackedBinary INFO Using specified sanity check commands: [] | |
| == 2013-11-19 15:27:50,562 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,563 main.filetools INFO Command modulecmd found at /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd | |
| == 2013-11-19 15:27:50,564 main.EnvironmentModulesC INFO Full path for module command is /import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd, so using it | |
| == 2013-11-19 15:27:50,565 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,565 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,566 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,579 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,580 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Core | |
| == 2013-11-19 15:27:50,580 main.EnvironmentModulesC WARNING Ignoring non-existing module path in $MODULEPATH: /import/bc2/soft/centos6/software/modulefiles/Linux | |
| == 2013-11-19 15:27:50,581 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,581 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,582 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/base' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,594 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,595 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,596 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,596 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/bio' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,608 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,609 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,610 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,610 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/chem' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,622 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,623 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,624 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,624 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/compiler' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,636 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,637 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,638 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,639 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/devel' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,650 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,651 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,652 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,653 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lang' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,665 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,666 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,666 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,667 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/lib' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,679 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,680 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,680 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,681 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/math' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,693 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,694 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,694 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,695 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/mpi' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,707 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,708 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,709 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,709 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/numlib' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,721 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,722 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,723 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,723 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/toolchain' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,735 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,736 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,737 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,738 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/tools' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,749 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,750 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,751 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,752 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/vis' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,764 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,765 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,765 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,766 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /import/bc2/soft/centos6/modules/all' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,778 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,779 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,779 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,780 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python use /scratch/tmpRp2jaJ/all' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,791 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,792 main.EnvironmentModulesC DEBUG Current MODULEPATH: /scratch/tmpRp2jaJ/all:/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,793 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' to '/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib' | |
| == 2013-11-19 15:27:50,794 main.EnvironmentModulesC DEBUG Running module command '/import/bc2/soft/packages/environment-modules-centos6/Modules/3.2.10/bin/modulecmd python unload CAP3/intel-12-21-2007' from /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,807 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] to ['/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib'] | |
| == 2013-11-19 15:27:50,808 main.filetools INFO Path /scratch/tmpRp2jaJ successfully removed. | |
| == 2013-11-19 15:27:50,809 main.environment DEBUG Key in new environment found that is different from old one: MODULEPATH (/import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core) | |
| == 2013-11-19 15:27:50,810 main.environment INFO Environment variable MODULEPATH set to /import/bc2/soft/centos6/modules/all:/import/bc2/soft/centos6/modules/vis:/import/bc2/soft/centos6/modules/tools:/import/bc2/soft/centos6/modules/toolchain:/import/bc2/soft/centos6/modules/numlib:/import/bc2/soft/centos6/modules/mpi:/import/bc2/soft/centos6/modules/math:/import/bc2/soft/centos6/modules/lib:/import/bc2/soft/centos6/modules/lang:/import/bc2/soft/centos6/modules/devel:/import/bc2/soft/centos6/modules/compiler:/import/bc2/soft/centos6/modules/chem:/import/bc2/soft/centos6/modules/bio:/import/bc2/soft/centos6/modules/base:/import/bc2/soft/centos6/software/modulefiles/Linux:/import/bc2/soft/centos6/software/modulefiles/Core:/import/bc2/soft/centos6/software/lmod/lmod/modulefiles/Core | |
| == 2013-11-19 15:27:50,811 main.PackedBinary ERROR EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1547 in sanity_check_step): Sanity check failed: no dir of ('bin',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007, no dir of ('lib',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| == 2013-11-19 15:27:50,811 main ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:96 in exception): EasyBuild encountered an exception (at easybuild/main.py:770 in build_and_install_software): autoBuild Failed (last 300 chars): EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1547 in sanity_check_step): Sanity check failed: no dir of ('bin',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007, no dir of ('lib',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007 | |
| Traceback (most recent call last): | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/main.py", line 766, in build_and_install_software | |
| regtest_online=options.regtest_online) | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/framework/easyblock.py", line 1765, in run_all_steps | |
| self.run_step(stop_name, step_methods, skippable=skippable) | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/framework/easyblock.py", line 1648, in run_step | |
| m(self) | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/framework/easyblock.py", line 1733, in <lambda> | |
| ('sanitycheck', 'sanity checking', [lambda x: x.sanity_check_step()], False), | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/framework/easyblock.py", line 1547, in sanity_check_step | |
| self.log.error("Sanity check failed: %s" % ', '.join(self.sanity_check_fail_msgs)) | |
| File "/import/bc2/soft/centos6/software/EasyBuild/1.9.0/lib/python2.6/site-packages/easybuild_framework-1.9.0-py2.6.egg/easybuild/tools/build_log.py", line 88, in error | |
| raise EasyBuildError(newMsg) | |
| EasyBuildError: "EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1547 in sanity_check_step): Sanity check failed: no dir of ('bin',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007, no dir of ('lib',) in /import/bc2/soft/centos6/software/CAP3/intel-12-21-2007" | |
| [pub@login11 cap3]$ |
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