emacs config file

.emacs

;; Melpa
(require 'package)
(add-to-list 'package-archives
             '("melpa" . "http://melpa.milkbox.net/packages/") t)
(package-initialize)

(when (memq window-system '(mac ns))
  (exec-path-from-shell-initialize))

(exec-path-from-shell-copy-env "PYTHONPATH")

(add-hook 'text-mode-hook 'flyspell-mode)

(package-initialize)
(elpy-enable)

(elpy-use-ipython)

(org-babel-do-load-languages
 'org-babel-load-languages (quote ((emacs-lisp . t)
                                    (sqlite . t)
                                    (R . t)
                                    (python . t))))

;; Place org table captions below table
(setq org-latex-caption-above nil)

;; Dont ask to evaluate sqlite in org-mode
(defun my-org-confirm-babel-evaluate1 (lang body)
            (not (string= lang "sql")))  ; don't ask for ditaa
          (setq org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate1)

;; Dont ask to evaluate sqlite in org-mode
(defun my-org-confirm-babel-evaluate2 (lang body)
            (not (string= lang "python")))  ; don't ask for ditaa
          (setq org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate2)


(eval-after-load "org"
  '(require 'ox-beamer nil t))
(eval-after-load "org"
  '(require 'ox-odt nil t))
(eval-after-load "org"
  '(require 'ox-md nil t))
(eval-after-load "org"
  '(require 'org-ref))


(setq reftex-default-bibliography '("~/Google Drive/References/library.bib"))

;; see org-ref for use of these variables
(setq org-ref-bibliography-notes "~/Google Drive/References/notes.org"
      org-ref-default-bibliography '("~/Google Drive/References/library.bib")
      org-ref-pdf-directory "~/Dropbox/Library/")

(setq org-latex-pdf-process
      '("pdflatex -interaction nonstopmode -output-directory %o %f"
	"bibtex %b"
	"pdflatex -interaction nonstopmode -output-directory %o %f"
	"pdflatex -interaction nonstopmode -output-directory %o %f"))
(custom-set-variables
 ;; custom-set-variables was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 '(org-agenda-files (quote ("~/src/fcat_biomass/calfire.org"))))
(custom-set-faces
 ;; custom-set-faces was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 )