Created
February 10, 2022 17:28
-
-
Save petebankhead/73c515b15a91c2412db493b66de88c76 to your computer and use it in GitHub Desktop.
QuPath script to create annotations corresponding to different regions in a training image
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| def server = getCurrentServer() | |
| def manager = server.getManager() | |
| def annotations = [] | |
| for (def region in manager.getRegions()) { | |
| def roi = ROIs.createRectangleROI(region) | |
| def server2 = manager.getServer(region, 1) | |
| def name = server2.getMetadata().getName() | |
| def pathObject = PathObjects.createAnnotationObject(roi) | |
| pathObject.setName(name) | |
| annotations << pathObject | |
| } | |
| addObjects(annotations) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment