Last active
December 7, 2018 20:36
-
-
Save peterdalle/18c844ef46c417c99b590138eeae4ce7 to your computer and use it in GitHub Desktop.
Convert 95% confidence interval (estimate, odds ratio, risk ratio or hazard ratio) to a p-value
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# Convert a 95% confidence interval to a p-value (two-sided). | |
# Based on: | |
# How to obtain the P value from a confidence interval | |
# BMJ 2011; 343 doi: https://doi.org/10.1136/bmj.d2304 | |
# From estimate to p-value. | |
estimate.to.pvalue <- function(estimate, lower, upper) { | |
stderror = (upper - lower) / (2 * 1.96) # Get standard error. | |
z = estimate / stderror # Get test statistic. | |
p.value = exp(-0.717 * z - 0.416 * (z ^ 2)) # Get p-value. | |
return(p.value) | |
} | |
# From odds ratio, risk ratio, and hazard ratio to p-value. | |
ratio.to.pvalue <- function(estimate, lower, upper) { | |
stderror <- (log(upper) - log(lower)) / (2 * 1.96) | |
z <- abs(log(estimate) / stderror) | |
p.value <- exp(-0.717 * z - 0.416 * z ^ 2) | |
return(p.value) | |
} | |
# 1.9, 95% CI [−0.6, 4.3] to p-value = 0.123. | |
estimate.to.pvalue(estimate=1.9, lower=-0.6, upper=4.3) | |
# 0.81, 95% CI [0.70, 0.94] to p-value = 0.005. | |
ratio.to.pvalue(estimate=0.81, lower=0.70, upper=0.94) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment