Created
January 15, 2013 01:53
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################### verbose output ################################# | |
brew install --HEAD beagle --with-cuda -v | |
==> Checking out http://beagle-lib.googlecode.com/svn/trunk/ | |
svn up --force /Library/Caches/Homebrew/beagle--svn-HEAD | |
At revision 1092. | |
svn export --force /Library/Caches/Homebrew/beagle--svn-HEAD /private/tmp/beagle-UFvZ | |
Export complete. | |
==> Patching | |
/usr/bin/patch -f -p1 -i 000-homebrew.diff | |
patching file configure.ac | |
==> ./autogen.sh | |
./autogen.sh | |
glibtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.config'. | |
glibtoolize: copying file `.config/ltmain.sh' | |
glibtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. | |
glibtoolize: copying file `m4/libtool.m4' | |
glibtoolize: copying file `m4/ltoptions.m4' | |
glibtoolize: copying file `m4/ltsugar.m4' | |
glibtoolize: copying file `m4/ltversion.m4' | |
glibtoolize: copying file `m4/lt~obsolete.m4' | |
configure.ac:56: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: | |
configure.ac:56: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_INIT_AUTOMAKE-invocation | |
configure.ac:64: installing '.config/config.guess' | |
configure.ac:64: installing '.config/config.sub' | |
configure.ac:56: installing '.config/install-sh' | |
configure.ac:56: installing '.config/missing' | |
Makefile.am: installing './INSTALL' | |
examples/complextest/Makefile.am: installing '.config/depcomp' | |
parallel-tests: installing '.config/test-driver' | |
libhmsbeagle/GPU/kernels/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') | |
==> ./configure --prefix=/usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin | |
./configure --prefix=/usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin | |
checking for a BSD-compatible install... /usr/bin/install -c | |
checking whether build environment is sane... yes | |
checking for a thread-safe mkdir -p... .config/install-sh -c -d | |
checking for gawk... no | |
checking for mawk... no | |
checking for nawk... no | |
checking for awk... awk | |
checking whether make sets $(MAKE)... yes | |
checking whether make supports nested variables... yes | |
checking for gcc... cc | |
checking whether the C compiler works... yes | |
checking for C compiler default output file name... a.out | |
checking for suffix of executables... | |
checking whether we are cross compiling... no | |
checking for suffix of object files... o | |
checking whether we are using the GNU C compiler... yes | |
checking whether cc accepts -g... yes | |
checking for cc option to accept ISO C89... none needed | |
checking for style of include used by make... GNU | |
checking dependency style of cc... gcc3 | |
checking whether we are using the GNU C++ compiler... yes | |
checking whether c++ accepts -g... yes | |
checking dependency style of c++... gcc3 | |
checking whether ln -s works... yes | |
checking build system type... x86_64-apple-darwin12.2.0 | |
checking host system type... x86_64-apple-darwin12.2.0 | |
checking how to print strings... printf | |
checking for a sed that does not truncate output... /usr/local/Library/ENV/4.3/sed | |
checking for grep that handles long lines and -e... /usr/bin/grep | |
checking for egrep... /usr/bin/grep -E | |
checking for fgrep... /usr/bin/grep -F | |
checking for ld used by cc... /usr/bin/ld | |
checking if the linker (/usr/bin/ld) is GNU ld... no | |
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm | |
checking the name lister (/usr/bin/nm) interface... BSD nm | |
checking the maximum length of command line arguments... 196608 | |
checking whether the shell understands some XSI constructs... yes | |
checking whether the shell understands "+="... yes | |
checking how to convert x86_64-apple-darwin12.2.0 file names to x86_64-apple-darwin12.2.0 format... func_convert_file_noop | |
checking how to convert x86_64-apple-darwin12.2.0 file names to toolchain format... func_convert_file_noop | |
checking for /usr/bin/ld option to reload object files... -r | |
checking for objdump... no | |
checking how to recognize dependent libraries... pass_all | |
checking for dlltool... no | |
checking how to associate runtime and link libraries... printf %s\n | |
checking for ar... ar | |
checking for archiver @FILE support... no | |
checking for strip... strip | |
checking for ranlib... ranlib | |
checking command to parse /usr/bin/nm output from cc object... ok | |
checking for sysroot... no | |
checking for mt... no | |
checking if : is a manifest tool... no | |
checking for dsymutil... dsymutil | |
checking for nmedit... nmedit | |
checking for lipo... lipo | |
checking for otool... otool | |
checking for otool64... no | |
checking for -single_module linker flag... yes | |
checking for -exported_symbols_list linker flag... yes | |
checking for -force_load linker flag... yes | |
checking how to run the C preprocessor... cc -E | |
checking for ANSI C header files... yes | |
checking for sys/types.h... yes | |
checking for sys/stat.h... yes | |
checking for stdlib.h... yes | |
checking for string.h... yes | |
checking for memory.h... yes | |
checking for strings.h... yes | |
checking for inttypes.h... yes | |
checking for stdint.h... yes | |
checking for unistd.h... yes | |
checking for dlfcn.h... yes | |
checking for objdir... .libs | |
checking if cc supports -fno-rtti -fno-exceptions... yes | |
checking for cc option to produce PIC... -fno-common -DPIC | |
checking if cc PIC flag -fno-common -DPIC works... yes | |
checking if cc static flag -static works... no | |
checking if cc supports -c -o file.o... yes | |
checking if cc supports -c -o file.o... (cached) yes | |
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking whether stripping libraries is possible... yes | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking how to run the C++ preprocessor... c++ -E | |
checking for ld used by c++... /usr/bin/ld | |
checking if the linker (/usr/bin/ld) is GNU ld... no | |
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes | |
checking for c++ option to produce PIC... -fno-common -DPIC | |
checking if c++ PIC flag -fno-common -DPIC works... yes | |
checking if c++ static flag -static works... no | |
checking if c++ supports -c -o file.o... yes | |
checking if c++ supports -c -o file.o... (cached) yes | |
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking for library containing lt_dlinit... -lltdl | |
checking if gcc accepts -dumpversion option... yes | |
checking gcc version... 4.2.1 | |
checking for /usr/local/cuda/... yes | |
checking for /usr/local/cuda/include... yes | |
checking for /usr/local/cuda/lib... yes | |
checking for nvcc... /Developer/NVIDIA/CUDA-5.0/bin/nvcc | |
checking for x86 cpuid output... unknown | |
checking for x86 cpuid 0x00000001 output... 20655:100800:29ae3ff:bfebfbff | |
checking whether mmx is supported... yes | |
checking whether sse is supported... yes | |
checking whether sse2 is supported... yes | |
checking whether sse3 is supported... yes | |
checking whether ssse3 is supported... yes | |
checking whether sse4.1 is supported... yes | |
checking whether sse4.2 is supported... yes | |
checking whether avx is supported... no | |
checking whether C compiler accepts -mmmx... yes | |
checking whether C compiler accepts -msse... yes | |
checking whether C compiler accepts -msse2... yes | |
checking whether C compiler accepts -msse3... yes | |
checking whether C compiler accepts -mssse3... yes | |
checking whether C compiler accepts -msse4.1... yes | |
checking whether C compiler accepts -msse4.2... yes | |
checking cpuid.h usability... yes | |
checking cpuid.h presence... yes | |
checking for cpuid.h... yes | |
./configure: line 16568: enable-osx-leopard=yes: command not found | |
checking for javac... javac | |
checking for javac... /usr/bin/javac | |
checking symlink for /usr/bin/javac... /System/Library/Frameworks/JavaVM.framework/Versions/Current/Commands/javac | |
checking for doxygen... no | |
configure: WARNING: doxygen not found - will not generate any doxygen documentation | |
checking for perl... /usr/bin/perl | |
checking that generated files are newer than configure... done | |
configure: creating ./config.status | |
config.status: creating Makefile | |
config.status: creating hmsbeagle-1.pc | |
config.status: creating libhmsbeagle/Makefile | |
config.status: creating libhmsbeagle/GPU/Makefile | |
config.status: creating libhmsbeagle/GPU/kernels/Makefile | |
config.status: creating libhmsbeagle/CPU/Makefile | |
config.status: creating libhmsbeagle/plugin/Makefile | |
config.status: creating examples/Makefile | |
config.status: creating examples/tinytest/Makefile | |
config.status: creating examples/complextest/Makefile | |
config.status: creating examples/oddstatetest/Makefile | |
config.status: creating examples/fourtaxon/Makefile | |
config.status: creating examples/genomictest/Makefile | |
config.status: creating examples/matrixtest/Makefile | |
config.status: creating libhmsbeagle/config.h | |
config.status: executing depfiles commands | |
config.status: executing libtool commands | |
==> make | |
make | |
Making all in libhmsbeagle | |
/usr/bin/make all-recursive | |
Making all in GPU | |
Making all in kernels | |
echo "// auto-generated header file with CUDA kernels PTX code" > BeagleCUDA_kernels.h | |
/Developer/NVIDIA/CUDA-5.0/bin/nvcc -o BeagleCUDA_kernels.ptx -ptx -DSTATE_COUNT=4 \ | |
./kernels4.cu -O3 -m64 -D_POSIX_C_SOURCE -DHAVE_CONFIG_H -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
echo "#define KERNELS_STRING_SP_4 \"\\" >> BeagleCUDA_kernels.h | |
cat BeagleCUDA_kernels.ptx | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleCUDA_kernels.h | |
echo "\"" >> BeagleCUDA_kernels.h | |
for s in 16 32 48 64 80 128 192; do \ | |
echo "Making state count = $s \n" ; \ | |
(/Developer/NVIDIA/CUDA-5.0/bin/nvcc -o BeagleCUDA_kernels.ptx -ptx -DSTATE_COUNT=$s \ | |
./kernelsX.cu -O3 -m64 -D_POSIX_C_SOURCE -DHAVE_CONFIG_H -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ) || exit; \ | |
echo "#define KERNELS_STRING_SP_$s \"\\" >> BeagleCUDA_kernels.h; \ | |
cat BeagleCUDA_kernels.ptx | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleCUDA_kernels.h; \ | |
echo "\"" >> BeagleCUDA_kernels.h; \ | |
done | |
Making state count = 16 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 32 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 48 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 80 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 128 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 192 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
/Developer/NVIDIA/CUDA-5.0/bin/nvcc -o BeagleCUDA_kernels.ptx -ptx -arch compute_13 -DSTATE_COUNT=4 -DDOUBLE_PRECISION \ | |
./kernels4.cu -O3 -m64 -D_POSIX_C_SOURCE -DHAVE_CONFIG_H -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
echo "#define KERNELS_STRING_DP_4 \"\\" >> BeagleCUDA_kernels.h | |
cat BeagleCUDA_kernels.ptx | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleCUDA_kernels.h | |
echo "\"" >> BeagleCUDA_kernels.h | |
for s in 16 32 48 64 80 128 192; do \ | |
echo "Making state count = $s \n" ; \ | |
(/Developer/NVIDIA/CUDA-5.0/bin/nvcc -o BeagleCUDA_kernels.ptx -ptx -arch compute_13 -DSTATE_COUNT=$s -DDOUBLE_PRECISION \ | |
./kernelsX.cu -O3 -m64 -D_POSIX_C_SOURCE -DHAVE_CONFIG_H -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ) || exit; \ | |
echo "#define KERNELS_STRING_DP_$s \"\\" >> BeagleCUDA_kernels.h; \ | |
cat BeagleCUDA_kernels.ptx | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleCUDA_kernels.h; \ | |
echo "\"" >> BeagleCUDA_kernels.h; \ | |
done | |
Making state count = 16 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 32 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 48 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 80 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 128 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
Making state count = 192 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
brew: superenv removed: -O3 -m64 | |
/usr/bin/make all-am | |
make[5]: Nothing to be done for `all-am'. | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-GPUImplHelper.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-GPUImplHelper.Tpo -c -o libhmsbeagle_cuda_la-GPUImplHelper.lo `test -f 'GPUImplHelper.cpp' || echo './'`GPUImplHelper.cpp | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-GPUInterfaceCUDA.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-GPUInterfaceCUDA.Tpo -c -o libhmsbeagle_cuda_la-GPUInterfaceCUDA.lo `test -f 'GPUInterfaceCUDA.cpp' || echo './'`GPUInterfaceCUDA.cpp | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-KernelLauncher.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-KernelLauncher.Tpo -c -o libhmsbeagle_cuda_la-KernelLauncher.lo `test -f 'KernelLauncher.cpp' || echo './'`KernelLauncher.cpp | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-KernelResource.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-KernelResource.Tpo -c -o libhmsbeagle_cuda_la-KernelResource.lo `test -f 'KernelResource.cpp' || echo './'`KernelResource.cpp | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-GPUImplHelper.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-GPUImplHelper.Tpo -c GPUImplHelper.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cuda_la-GPUImplHelper.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-KernelLauncher.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-KernelLauncher.Tpo -c KernelLauncher.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cuda_la-KernelLauncher.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-GPUInterfaceCUDA.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-GPUInterfaceCUDA.Tpo -c GPUInterfaceCUDA.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cuda_la-GPUInterfaceCUDA.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-KernelResource.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-KernelResource.Tpo -c KernelResource.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cuda_la-KernelResource.o | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
mv -f .deps/libhmsbeagle_cuda_la-KernelResource.Tpo .deps/libhmsbeagle_cuda_la-KernelResource.Plo | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-CUDAPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-CUDAPlugin.Tpo -c -o libhmsbeagle_cuda_la-CUDAPlugin.lo `test -f 'CUDAPlugin.cpp' || echo './'`CUDAPlugin.cpp | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -MT libhmsbeagle_cuda_la-CUDAPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cuda_la-CUDAPlugin.Tpo -c CUDAPlugin.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cuda_la-CUDAPlugin.o | |
brew: superenv removed: -m64 -O3 | |
mv -f .deps/libhmsbeagle_cuda_la-KernelLauncher.Tpo .deps/libhmsbeagle_cuda_la-KernelLauncher.Plo | |
mv -f .deps/libhmsbeagle_cuda_la-GPUImplHelper.Tpo .deps/libhmsbeagle_cuda_la-GPUImplHelper.Plo | |
mv -f .deps/libhmsbeagle_cuda_la-GPUInterfaceCUDA.Tpo .deps/libhmsbeagle_cuda_la-GPUInterfaceCUDA.Plo | |
mv -f .deps/libhmsbeagle_cuda_la-CUDAPlugin.Tpo .deps/libhmsbeagle_cuda_la-CUDAPlugin.Plo | |
/bin/sh ../../libtool --tag=CXX --mode=link c++ -DDLS_MACOS -m64 -DCUDA -I/usr/local/cuda/include -O3 -version-info 1:1:0 -o libhmsbeagle-cuda.la -rpath /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib libhmsbeagle_cuda_la-GPUImplHelper.lo libhmsbeagle_cuda_la-GPUInterfaceCUDA.lo libhmsbeagle_cuda_la-KernelLauncher.lo libhmsbeagle_cuda_la-KernelResource.lo libhmsbeagle_cuda_la-CUDAPlugin.lo -lcuda -L/usr/local/cuda/lib -lltdl | |
libtool: link: c++ -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libhmsbeagle-cuda.1.dylib .libs/libhmsbeagle_cuda_la-GPUImplHelper.o .libs/libhmsbeagle_cuda_la-GPUInterfaceCUDA.o .libs/libhmsbeagle_cuda_la-KernelLauncher.o .libs/libhmsbeagle_cuda_la-KernelResource.o .libs/libhmsbeagle_cuda_la-CUDAPlugin.o -lcuda -L/usr/local/cuda/lib -lltdl -m64 -O3 -install_name /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib/libhmsbeagle-cuda.1.dylib -compatibility_version 2 -current_version 2.1 -Wl,-single_module | |
brew: superenv removed: -m64 -O3 | |
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cuda.dylib" && ln -s "libhmsbeagle-cuda.1.dylib" "libhmsbeagle-cuda.dylib") | |
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cuda.la" && ln -s "../libhmsbeagle-cuda.la" "libhmsbeagle-cuda.la" ) | |
Making all in CPU | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cpu_la-BeagleCPUPlugin.Tpo -c -o libhmsbeagle_cpu_la-BeagleCPUPlugin.lo `test -f 'BeagleCPUPlugin.cpp' || echo './'`BeagleCPUPlugin.cpp | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -msse2 -O3 -MT libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.Tpo -c -o libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo `test -f 'BeagleCPUSSEPlugin.cpp' || echo './'`BeagleCPUSSEPlugin.cpp | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -msse2 -O3 -MT libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.Tpo -c BeagleCPUSSEPlugin.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/private/tmp/beagle-UFvZ -I/private/tmp/beagle-UFvZ -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -MD -MP -MF .deps/libhmsbeagle_cpu_la-BeagleCPUPlugin.Tpo -c BeagleCPUPlugin.cpp -fno-common -DPIC -o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
mv -f .deps/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.Tpo .deps/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.Plo | |
/bin/sh ../../libtool --tag=CXX --mode=link c++ -DDLS_MACOS -m64 -msse2 -O3 -version-info 1:1:0 -o libhmsbeagle-cpu-sse.la -rpath /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo -lltdl | |
mv -f .deps/libhmsbeagle_cpu_la-BeagleCPUPlugin.Tpo .deps/libhmsbeagle_cpu_la-BeagleCPUPlugin.Plo | |
/bin/sh ../../libtool --tag=CXX --mode=link c++ -DDLS_MACOS -m64 -O3 -version-info 1:1:0 -o libhmsbeagle-cpu.la -rpath /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -lltdl | |
libtool: link: c++ -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libhmsbeagle-cpu-sse.1.dylib .libs/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o -lltdl -m64 -msse2 -O3 -install_name /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib/libhmsbeagle-cpu-sse.1.dylib -compatibility_version 2 -current_version 2.1 -Wl,-single_module | |
brew: superenv removed: -m64 -O3 | |
libtool: link: c++ -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libhmsbeagle-cpu.1.dylib .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o -lltdl -m64 -O3 -install_name /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib/libhmsbeagle-cpu.1.dylib -compatibility_version 2 -current_version 2.1 -Wl,-single_module | |
brew: superenv removed: -m64 -O3 | |
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu-sse.dylib" && ln -s "libhmsbeagle-cpu-sse.1.dylib" "libhmsbeagle-cpu-sse.dylib") | |
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu-sse.la" && ln -s "../libhmsbeagle-cpu-sse.la" "libhmsbeagle-cpu-sse.la" ) | |
libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.dylib" && ln -s "libhmsbeagle-cpu.1.dylib" "libhmsbeagle-cpu.dylib") | |
libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu.la" && ln -s "../libhmsbeagle-cpu.la" "libhmsbeagle-cpu.la" ) | |
Making all in plugin | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libplugin_la-Plugin.lo -MD -MP -MF .deps/libplugin_la-Plugin.Tpo -c -o libplugin_la-Plugin.lo `test -f 'Plugin.cpp' || echo './'`Plugin.cpp | |
/bin/sh ../../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libplugin_la-UnixSharedLibrary.lo -MD -MP -MF .deps/libplugin_la-UnixSharedLibrary.Tpo -c -o libplugin_la-UnixSharedLibrary.lo `test -f 'UnixSharedLibrary.cpp' || echo './'`UnixSharedLibrary.cpp | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libplugin_la-UnixSharedLibrary.lo -MD -MP -MF .deps/libplugin_la-UnixSharedLibrary.Tpo -c UnixSharedLibrary.cpp -fno-common -DPIC -o .libs/libplugin_la-UnixSharedLibrary.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libplugin_la-Plugin.lo -MD -MP -MF .deps/libplugin_la-Plugin.Tpo -c Plugin.cpp -fno-common -DPIC -o .libs/libplugin_la-Plugin.o | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
mv -f .deps/libplugin_la-Plugin.Tpo .deps/libplugin_la-Plugin.Plo | |
mv -f .deps/libplugin_la-UnixSharedLibrary.Tpo .deps/libplugin_la-UnixSharedLibrary.Plo | |
/bin/sh ../../libtool --tag=CXX --mode=link c++ -DDLS_MACOS -m64 -O3 -o libplugin.la libplugin_la-Plugin.lo libplugin_la-UnixSharedLibrary.lo -lltdl | |
libtool: link: ar cru .libs/libplugin.a .libs/libplugin_la-Plugin.o .libs/libplugin_la-UnixSharedLibrary.o | |
libtool: link: ranlib .libs/libplugin.a | |
libtool: link: ( cd ".libs" && rm -f "libplugin.la" && ln -s "../libplugin.la" "libplugin.la" ) | |
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_la-beagle.lo -MD -MP -MF .deps/libhmsbeagle_la-beagle.Tpo -c -o libhmsbeagle_la-beagle.lo `test -f 'beagle.cpp' || echo './'`beagle.cpp | |
/bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -MD -MP -MF .deps/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.Tpo -c -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo `test -f 'JNI/beagle_BeagleJNIWrapper.cpp' || echo './'`JNI/beagle_BeagleJNIWrapper.cpp | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_la-beagle.lo -MD -MP -MF .deps/libhmsbeagle_la-beagle.Tpo -c beagle.cpp -fno-common -DPIC -o .libs/libhmsbeagle_la-beagle.o | |
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers -DDLS_MACOS -m64 -O3 -MT libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -MD -MP -MF .deps/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.Tpo -c JNI/beagle_BeagleJNIWrapper.cpp -fno-common -DPIC -o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o | |
brew: superenv removed: -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
mv -f .deps/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.Tpo .deps/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.Plo | |
/bin/sh ../libtool --tag=CXX --mode=link c++ -DDLS_MACOS -m64 -O3 -module -avoid-version -shrext .jnilib -o libhmsbeagle-jni.la -rpath /usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin/lib libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -lhmsbeagle -lltdl | |
libtool: link: c++ -Wl,-undefined -Wl,dynamic_lookup -o .libs/libhmsbeagle-jni.jnilib -bundle .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -lhmsbeagle -lltdl -m64 -O3 | |
brew: superenv removed: -m64 -O3 | |
ld: library not found for -lhmsbeagle | |
clang: error: linker command failed with exit code 1 (use -v to see invocation) | |
make[3]: *** [libhmsbeagle-jni.la] Error 1 | |
make[3]: *** Waiting for unfinished jobs.... | |
mv -f .deps/libhmsbeagle_la-beagle.Tpo .deps/libhmsbeagle_la-beagle.Plo | |
make[2]: *** [all-recursive] Error 1 | |
make[1]: *** [all] Error 2 | |
make: *** [all-recursive] Error 1 | |
==> Configuration | |
HOMEBREW_VERSION: 0.9.3 | |
HEAD: 9bf47d705a41777275910a5948077073be9dad4d | |
CPU: quad-core 64-bit arrandale | |
OS X: 10.8.2-x86_64 | |
Xcode: 4.5.2 | |
CLT: 4.5.0.0.1.1249367152 | |
X11: 2.7.4 => /opt/X11 | |
==> ENV | |
CC: cc | |
CXX: c++ | |
MAKEFLAGS: -j4 | |
CMAKE_PREFIX_PATH: /usr/local | |
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers/ | |
CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
PKG_CONFIG_PATH: /usr/local/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/mountain_lion | |
ACLOCAL_PATH: /usr/local/share/aclocal | |
OBJC: cc | |
PATH: /usr/local/Library/ENV/4.3:/usr/local/opt/autoconf/bin:/usr/local/opt/automake/bin:/usr/local/opt/libtool/bin:/usr/local/opt/python/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/Cellar/python/2.7.3/bin:/usr/local/bin:/usr/local/sbin:/Users/crd1859/bin:/Users/crd1859/.rvm/gems/ruby-1.9.3-p194/bin:/Users/crd1859/.rvm/gems/ruby-1.9.3-p194@global/bin:/Users/crd1859/.rvm/rubies/ruby-1.9.3-p194/bin:/Users/crd1859/.rvm/bin:/Developer/NVIDIA/CUDA-5.0/bin:/Users/crd1859/.pythonbrew/bin:/Users/crd1859/.pythonbrew/pythons/Python-2.7.2/bin:/Users/crd1859/perl5/perlbrew/bin:/Users/crd1859/perl5/perlbrew/perls/perl-5.16.0/bin | |
Error: beagle did not build | |
Logs: /Users/crd1859/Library/Logs/Homebrew/beagle/config.log | |
################################################################## | |
######### config.log ############## | |
This file contains any messages produced by compilers while | |
running configure, to aid debugging if configure makes a mistake. | |
It was created by libhmsbeagle configure 1.0.0, which was | |
generated by GNU Autoconf 2.69. Invocation command line was | |
$ ./configure --prefix=/usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin | |
## --------- ## | |
## Platform. ## | |
## --------- ## | |
hostname = Peter-Fieldss-MacBook-Pro.local | |
uname -m = x86_64 | |
uname -r = 12.2.0 | |
uname -s = Darwin | |
uname -v = Darwin Kernel Version 12.2.0: Sat Aug 25 00:48:52 PDT 2012; root:xnu-2050.18.24~1/RELEASE_X86_64 | |
/usr/bin/uname -p = i386 | |
/bin/uname -X = unknown | |
/bin/arch = unknown | |
/usr/bin/arch -k = unknown | |
/usr/convex/getsysinfo = unknown | |
/usr/bin/hostinfo = Mach kernel version: | |
Darwin Kernel Version 12.2.0: Sat Aug 25 00:48:52 PDT 2012; root:xnu-2050.18.24~1/RELEASE_X86_64 | |
Kernel configured for up to 4 processors. | |
2 processors are physically available. | |
4 processors are logically available. | |
Processor type: i486 (Intel 80486) | |
Processors active: 0 1 2 3 | |
Primary memory available: 8.00 gigabytes | |
Default processor set: 142 tasks, 847 threads, 4 processors | |
Load average: 2.64, Mach factor: 1.64 | |
/bin/machine = unknown | |
/usr/bin/oslevel = unknown | |
/bin/universe = unknown | |
PATH: /usr/local/Library/ENV/4.3 | |
PATH: /usr/local/opt/autoconf/bin | |
PATH: /usr/local/opt/automake/bin | |
PATH: /usr/local/opt/libtool/bin | |
PATH: /usr/local/opt/python/bin | |
PATH: /usr/bin | |
PATH: /bin | |
PATH: /usr/sbin | |
PATH: /sbin | |
PATH: /usr/local/Cellar/python/2.7.3/bin | |
PATH: /usr/local/bin | |
PATH: /usr/local/sbin | |
PATH: /Users/crd1859/bin | |
PATH: /Users/crd1859/.rvm/gems/ruby-1.9.3-p194/bin | |
PATH: /Users/crd1859/.rvm/gems/ruby-1.9.3-p194@global/bin | |
PATH: /Users/crd1859/.rvm/rubies/ruby-1.9.3-p194/bin | |
PATH: /Users/crd1859/.rvm/bin | |
PATH: /Developer/NVIDIA/CUDA-5.0/bin | |
PATH: /Users/crd1859/.pythonbrew/bin | |
PATH: /Users/crd1859/.pythonbrew/pythons/Python-2.7.2/bin | |
PATH: /Users/crd1859/perl5/perlbrew/bin | |
PATH: /Users/crd1859/perl5/perlbrew/perls/perl-5.16.0/bin | |
## ----------- ## | |
## Core tests. ## | |
## ----------- ## | |
configure:2550: checking for a BSD-compatible install | |
configure:2618: result: /usr/bin/install -c | |
configure:2629: checking whether build environment is sane | |
configure:2684: result: yes | |
configure:2835: checking for a thread-safe mkdir -p | |
configure:2874: result: .config/install-sh -c -d | |
configure:2881: checking for gawk | |
configure:2911: result: no | |
configure:2881: checking for mawk | |
configure:2911: result: no | |
configure:2881: checking for nawk | |
configure:2911: result: no | |
configure:2881: checking for awk | |
configure:2897: found /usr/bin/awk | |
configure:2908: result: awk | |
configure:2919: checking whether make sets $(MAKE) | |
configure:2941: result: yes | |
configure:2970: checking whether make supports nested variables | |
configure:2987: result: yes | |
configure:3107: checking for gcc | |
configure:3134: result: cc | |
configure:3363: checking for C compiler version | |
configure:3372: cc --version >&5 | |
Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn) | |
Target: x86_64-apple-darwin12.2.0 | |
Thread model: posix | |
configure:3383: $? = 0 | |
configure:3372: cc -v >&5 | |
Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn) | |
Target: x86_64-apple-darwin12.2.0 | |
Thread model: posix | |
clang: warning: argument unused during compilation: '-isystem /usr/local/include' | |
clang: warning: argument unused during compilation: '-isystem /usr/include/libxml2' | |
clang: warning: argument unused during compilation: '-isystem /System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers/' | |
clang: warning: argument unused during compilation: '-L/usr/local/lib' | |
clang: warning: argument unused during compilation: '-L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries' | |
configure:3383: $? = 0 | |
configure:3372: cc -V >&5 | |
clang: error: unsupported option '-V -isystem/usr/local/include' | |
clang: error: no input files | |
configure:3383: $? = 1 | |
configure:3372: cc -qversion >&5 | |
clang: error: no input files | |
configure:3383: $? = 1 | |
configure:3403: checking whether the C compiler works | |
configure:3425: cc conftest.c >&5 | |
configure:3429: $? = 0 | |
configure:3477: result: yes | |
configure:3480: checking for C compiler default output file name | |
configure:3482: result: a.out | |
configure:3488: checking for suffix of executables | |
configure:3495: cc -o conftest conftest.c >&5 | |
configure:3499: $? = 0 | |
configure:3521: result: | |
configure:3543: checking whether we are cross compiling | |
configure:3551: cc -o conftest conftest.c >&5 | |
configure:3555: $? = 0 | |
configure:3562: ./conftest | |
configure:3566: $? = 0 | |
configure:3581: result: no | |
configure:3586: checking for suffix of object files | |
configure:3608: cc -c conftest.c >&5 | |
configure:3612: $? = 0 | |
configure:3633: result: o | |
configure:3637: checking whether we are using the GNU C compiler | |
configure:3656: cc -c conftest.c >&5 | |
configure:3656: $? = 0 | |
configure:3665: result: yes | |
configure:3674: checking whether cc accepts -g | |
configure:3694: cc -c -g conftest.c >&5 | |
configure:3694: $? = 0 | |
configure:3735: result: yes | |
configure:3752: checking for cc option to accept ISO C89 | |
configure:3815: cc -c -g -O2 conftest.c >&5 | |
configure:3815: $? = 0 | |
configure:3828: result: none needed | |
configure:3859: checking for style of include used by make | |
configure:3887: result: GNU | |
configure:3913: checking dependency style of cc | |
configure:4024: result: gcc3 | |
configure:4151: checking for C++ compiler version | |
configure:4160: c++ --version >&5 | |
Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn) | |
Target: x86_64-apple-darwin12.2.0 | |
Thread model: posix | |
configure:4171: $? = 0 | |
configure:4160: c++ -v >&5 | |
Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn) | |
Target: x86_64-apple-darwin12.2.0 | |
Thread model: posix | |
clang: warning: argument unused during compilation: '-isystem /usr/local/include' | |
clang: warning: argument unused during compilation: '-isystem /usr/include/libxml2' | |
clang: warning: argument unused during compilation: '-isystem /System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers/' | |
clang: warning: argument unused during compilation: '-L/usr/local/lib' | |
clang: warning: argument unused during compilation: '-L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries' | |
configure:4171: $? = 0 | |
configure:4160: c++ -V >&5 | |
clang: error: unsupported option '-V -isystem/usr/local/include' | |
clang: error: no input files | |
configure:4171: $? = 1 | |
configure:4160: c++ -qversion >&5 | |
clang: error: no input files | |
configure:4171: $? = 1 | |
configure:4175: checking whether we are using the GNU C++ compiler | |
configure:4194: c++ -c -O3 conftest.cpp >&5 | |
configure:4194: $? = 0 | |
configure:4203: result: yes | |
configure:4212: checking whether c++ accepts -g | |
configure:4232: c++ -c -g conftest.cpp >&5 | |
configure:4232: $? = 0 | |
configure:4273: result: yes | |
configure:4298: checking dependency style of c++ | |
configure:4409: result: gcc3 | |
configure:4425: checking whether ln -s works | |
configure:4429: result: yes | |
configure:4524: checking build system type | |
configure:4538: result: x86_64-apple-darwin12.2.0 | |
configure:4558: checking host system type | |
configure:4571: result: x86_64-apple-darwin12.2.0 | |
configure:4612: checking how to print strings | |
configure:4639: result: printf | |
configure:4660: checking for a sed that does not truncate output | |
configure:4724: result: /usr/local/Library/ENV/4.3/sed | |
configure:4742: checking for grep that handles long lines and -e | |
configure:4800: result: /usr/bin/grep | |
configure:4805: checking for egrep | |
configure:4867: result: /usr/bin/grep -E | |
configure:4872: checking for fgrep | |
configure:4934: result: /usr/bin/grep -F | |
configure:4969: checking for ld used by cc | |
configure:5036: result: /usr/bin/ld | |
configure:5043: checking if the linker (/usr/bin/ld) is GNU ld | |
configure:5058: result: no | |
configure:5070: checking for BSD- or MS-compatible name lister (nm) | |
configure:5119: result: /usr/bin/nm | |
configure:5249: checking the name lister (/usr/bin/nm) interface | |
configure:5256: cc -c -g -O2 conftest.c >&5 | |
configure:5259: /usr/bin/nm "conftest.o" | |
configure:5262: output | |
000000000000020c S _some_variable | |
configure:5269: result: BSD nm | |
configure:5273: checking the maximum length of command line arguments | |
configure:5403: result: 196608 | |
configure:5420: checking whether the shell understands some XSI constructs | |
configure:5430: result: yes | |
configure:5434: checking whether the shell understands "+=" | |
configure:5440: result: yes | |
configure:5475: checking how to convert x86_64-apple-darwin12.2.0 file names to x86_64-apple-darwin12.2.0 format | |
configure:5515: result: func_convert_file_noop | |
configure:5522: checking how to convert x86_64-apple-darwin12.2.0 file names to toolchain format | |
configure:5542: result: func_convert_file_noop | |
configure:5549: checking for /usr/bin/ld option to reload object files | |
configure:5556: result: -r | |
configure:5630: checking for objdump | |
configure:5660: result: no | |
configure:5689: checking how to recognize dependent libraries | |
configure:5891: result: pass_all | |
configure:5976: checking for dlltool | |
configure:6006: result: no | |
configure:6036: checking how to associate runtime and link libraries | |
configure:6063: result: printf %s\n | |
configure:6124: checking for ar | |
configure:6140: found /usr/bin/ar | |
configure:6151: result: ar | |
configure:6188: checking for archiver @FILE support | |
configure:6205: cc -c -g -O2 conftest.c >&5 | |
configure:6205: $? = 0 | |
configure:6208: ar cru libconftest.a @conftest.lst >&5 | |
ar: @conftest.lst: No such file or directory | |
configure:6211: $? = 1 | |
configure:6231: result: no | |
configure:6289: checking for strip | |
configure:6305: found /usr/bin/strip | |
configure:6316: result: strip | |
configure:6388: checking for ranlib | |
configure:6404: found /usr/bin/ranlib | |
configure:6415: result: ranlib | |
configure:6517: checking command to parse /usr/bin/nm output from cc object | |
configure:6637: cc -c -g -O2 conftest.c >&5 | |
configure:6640: $? = 0 | |
configure:6644: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm | |
configure:6647: $? = 0 | |
cannot find nm_test_var in conftest.nm | |
configure:6637: cc -c -g -O2 conftest.c >&5 | |
configure:6640: $? = 0 | |
configure:6644: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm | |
configure:6647: $? = 0 | |
configure:6713: cc -o conftest -g -O2 conftest.c conftstm.o >&5 | |
configure:6716: $? = 0 | |
configure:6754: result: ok | |
configure:6791: checking for sysroot | |
configure:6821: result: no | |
configure:7077: checking for mt | |
configure:7107: result: no | |
configure:7127: checking if : is a manifest tool | |
configure:7133: : '-?' | |
configure:7141: result: no | |
configure:7197: checking for dsymutil | |
configure:7213: found /usr/bin/dsymutil | |
configure:7224: result: dsymutil | |
configure:7289: checking for nmedit | |
configure:7305: found /usr/bin/nmedit | |
configure:7316: result: nmedit | |
configure:7381: checking for lipo | |
configure:7397: found /usr/bin/lipo | |
configure:7408: result: lipo | |
configure:7473: checking for otool | |
configure:7489: found /usr/bin/otool | |
configure:7500: result: otool | |
configure:7565: checking for otool64 | |
configure:7595: result: no | |
configure:7640: checking for -single_module linker flag | |
cc -g -O2 -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c | |
configure:7673: result: yes | |
configure:7676: checking for -exported_symbols_list linker flag | |
configure:7696: cc -o conftest -g -O2 -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 | |
configure:7696: $? = 0 | |
configure:7706: result: yes | |
configure:7709: checking for -force_load linker flag | |
cc -g -O2 -c -o conftest.o conftest.c | |
ar cru libconftest.a conftest.o | |
ranlib libconftest.a | |
cc -g -O2 -o conftest conftest.c -Wl,-force_load,./libconftest.a | |
configure:7741: result: yes | |
configure:7783: checking how to run the C preprocessor | |
configure:7814: cc -E conftest.c | |
configure:7814: $? = 0 | |
configure:7828: cc -E conftest.c | |
conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found | |
#include <ac_nonexistent.h> | |
^ | |
1 error generated. | |
configure:7828: $? = 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| /* end confdefs.h. */ | |
| #include <ac_nonexistent.h> | |
configure:7853: result: cc -E | |
configure:7873: cc -E conftest.c | |
configure:7873: $? = 0 | |
configure:7887: cc -E conftest.c | |
conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found | |
#include <ac_nonexistent.h> | |
^ | |
1 error generated. | |
configure:7887: $? = 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| /* end confdefs.h. */ | |
| #include <ac_nonexistent.h> | |
configure:7916: checking for ANSI C header files | |
configure:7936: cc -c -g -O2 conftest.c >&5 | |
configure:7936: $? = 0 | |
configure:8009: cc -o conftest -g -O2 conftest.c >&5 | |
configure:8009: $? = 0 | |
configure:8009: ./conftest | |
configure:8009: $? = 0 | |
configure:8020: result: yes | |
configure:8033: checking for sys/types.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for sys/stat.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for stdlib.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for string.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for memory.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for strings.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for inttypes.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for stdint.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8033: checking for unistd.h | |
configure:8033: cc -c -g -O2 conftest.c >&5 | |
configure:8033: $? = 0 | |
configure:8033: result: yes | |
configure:8047: checking for dlfcn.h | |
configure:8047: cc -c -g -O2 conftest.c >&5 | |
configure:8047: $? = 0 | |
configure:8047: result: yes | |
configure:8234: checking for objdir | |
configure:8249: result: .libs | |
configure:8520: checking if cc supports -fno-rtti -fno-exceptions | |
configure:8538: cc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 | |
configure:8542: $? = 0 | |
configure:8555: result: yes | |
configure:8882: checking for cc option to produce PIC | |
configure:8889: result: -fno-common -DPIC | |
configure:8897: checking if cc PIC flag -fno-common -DPIC works | |
configure:8915: cc -c -g -O2 -fno-common -DPIC -DPIC conftest.c >&5 | |
configure:8919: $? = 0 | |
configure:8932: result: yes | |
configure:8961: checking if cc static flag -static works | |
configure:8989: result: no | |
configure:9004: checking if cc supports -c -o file.o | |
configure:9025: cc -c -g -O2 -o out/conftest2.o conftest.c >&5 | |
configure:9029: $? = 0 | |
configure:9051: result: yes | |
configure:9059: checking if cc supports -c -o file.o | |
configure:9106: result: yes | |
configure:9139: checking whether the cc linker (/usr/bin/ld) supports shared libraries | |
configure:10292: result: yes | |
configure:10532: checking dynamic linker characteristics | |
configure:11265: result: darwin12.2.0 dyld | |
configure:11372: checking how to hardcode library paths into programs | |
configure:11397: result: immediate | |
configure:11937: checking whether stripping libraries is possible | |
configure:11951: result: yes | |
configure:11977: checking if libtool supports shared libraries | |
configure:11979: result: yes | |
configure:11982: checking whether to build shared libraries | |
configure:12003: result: yes | |
configure:12006: checking whether to build static libraries | |
configure:12010: result: no | |
configure:12033: checking how to run the C++ preprocessor | |
configure:12060: c++ -E conftest.cpp | |
configure:12060: $? = 0 | |
configure:12074: c++ -E conftest.cpp | |
conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found | |
#include <ac_nonexistent.h> | |
^ | |
1 error generated. | |
configure:12074: $? = 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define LT_OBJDIR ".libs/" | |
| /* end confdefs.h. */ | |
| #include <ac_nonexistent.h> | |
configure:12099: result: c++ -E | |
configure:12119: c++ -E conftest.cpp | |
configure:12119: $? = 0 | |
configure:12133: c++ -E conftest.cpp | |
conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found | |
#include <ac_nonexistent.h> | |
^ | |
1 error generated. | |
configure:12133: $? = 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define LT_OBJDIR ".libs/" | |
| /* end confdefs.h. */ | |
| #include <ac_nonexistent.h> | |
configure:12302: checking for ld used by c++ | |
configure:12369: result: /usr/bin/ld | |
configure:12376: checking if the linker (/usr/bin/ld) is GNU ld | |
configure:12391: result: no | |
configure:12446: checking whether the c++ linker (/usr/bin/ld) supports shared libraries | |
configure:13451: result: yes | |
configure:13487: c++ -c -O3 conftest.cpp >&5 | |
configure:13490: $? = 0 | |
configure:14010: checking for c++ option to produce PIC | |
configure:14017: result: -fno-common -DPIC | |
configure:14025: checking if c++ PIC flag -fno-common -DPIC works | |
configure:14043: c++ -c -O3 -fno-common -DPIC -DPIC conftest.cpp >&5 | |
configure:14047: $? = 0 | |
configure:14060: result: yes | |
configure:14083: checking if c++ static flag -static works | |
configure:14111: result: no | |
configure:14123: checking if c++ supports -c -o file.o | |
configure:14144: c++ -c -O3 -o out/conftest2.o conftest.cpp >&5 | |
configure:14148: $? = 0 | |
configure:14170: result: yes | |
configure:14175: checking if c++ supports -c -o file.o | |
configure:14222: result: yes | |
configure:14252: checking whether the c++ linker (/usr/bin/ld) supports shared libraries | |
configure:14288: result: yes | |
configure:14429: checking dynamic linker characteristics | |
configure:15096: result: darwin12.2.0 dyld | |
configure:15149: checking how to hardcode library paths into programs | |
configure:15174: result: immediate | |
configure:15250: checking for library containing lt_dlinit | |
configure:15281: cc -o conftest -g -O2 conftest.c >&5 | |
Undefined symbols for architecture x86_64: | |
"_lt_dlinit", referenced from: | |
_main in conftest-sF6vXV.o | |
ld: symbol(s) not found for architecture x86_64 | |
clang: error: linker command failed with exit code 1 (use -v to see invocation) | |
configure:15281: $? = 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define LT_OBJDIR ".libs/" | |
| /* end confdefs.h. */ | |
| | |
| /* Override any GCC internal prototype to avoid an error. | |
| Use char because int might match the return type of a GCC | |
| builtin and then its argument prototype would still apply. */ | |
| #ifdef __cplusplus | |
| extern "C" | |
| #endif | |
| char lt_dlinit (); | |
| int | |
| main () | |
| { | |
| return lt_dlinit (); | |
| ; | |
| return 0; | |
| } | |
configure:15281: cc -o conftest -g -O2 conftest.c -lltdl >&5 | |
configure:15281: $? = 0 | |
configure:15298: result: -lltdl | |
configure:15378: checking if gcc accepts -dumpversion option | |
configure:15403: cat conftest.c 1>&5 | |
int main() | |
{ | |
return 0; | |
} | |
configure:15406: $? = 0 | |
configure:15410: cc -dumpversion -c conftest.c 1>&5 | |
4.2.1 | |
configure:15413: $? = 0 | |
configure:15416: result: yes | |
configure:15443: checking gcc version | |
configure:15457: result: 4.2.1 | |
configure:15738: checking for /usr/local/cuda/ | |
configure:15751: result: yes | |
configure:15757: checking for /usr/local/cuda/include | |
configure:15770: result: yes | |
configure:15776: checking for /usr/local/cuda/lib | |
configure:15789: result: yes | |
configure:15817: checking for nvcc | |
configure:15836: found /Developer/NVIDIA/CUDA-5.0/bin/nvcc | |
configure:15849: result: /Developer/NVIDIA/CUDA-5.0/bin/nvcc | |
configure:15904: checking for x86 cpuid output | |
configure:15933: cc -o conftest -g -O2 conftest.c -lltdl >&5 | |
conftest.c:27:15: error: expected expression | |
int op = , eax, ebx, ecx, edx; | |
^ | |
1 error generated. | |
configure:15933: $? = 1 | |
configure: program exited with status 1 | |
configure: failed program was: | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "libhmsbeagle" | |
| #define PACKAGE_TARNAME "libhmsbeagle" | |
| #define PACKAGE_VERSION "1.0.0" | |
| #define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
| #define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
| #define PACKAGE_URL "" | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_DLFCN_H 1 | |
| #define LT_OBJDIR ".libs/" | |
| #define HAVE_LIBLTDL "1" | |
| /* end confdefs.h. */ | |
| #include <stdio.h> | |
| int | |
| main () | |
| { | |
| | |
| int op = , eax, ebx, ecx, edx; | |
| FILE *f; | |
| __asm__("cpuid" | |
| : "=a" (eax), "=b" (ebx), "=c" (ecx), "=d" (edx) | |
| : "a" (op)); | |
| f = fopen("conftest_cpuid", "w"); if (!f) return 1; | |
| fprintf(f, "%x:%x:%x:%x\n", eax, ebx, ecx, edx); | |
| fclose(f); | |
| return 0; | |
| | |
| ; | |
| return 0; | |
| } | |
configure:15943: result: unknown | |
configure:15962: checking for x86 cpuid 0x00000001 output | |
configure:15991: cc -o conftest -g -O2 conftest.c -lltdl >&5 | |
configure:15991: $? = 0 | |
configure:15991: ./conftest | |
configure:15991: $? = 0 | |
configure:16001: result: 20655:100800:29ae3ff:bfebfbff | |
configure:16013: checking whether mmx is supported | |
configure:16025: result: yes | |
configure:16028: checking whether sse is supported | |
configure:16040: result: yes | |
configure:16043: checking whether sse2 is supported | |
configure:16063: result: yes | |
configure:16066: checking whether sse3 is supported | |
configure:16078: result: yes | |
configure:16081: checking whether ssse3 is supported | |
configure:16093: result: yes | |
configure:16096: checking whether sse4.1 is supported | |
configure:16108: result: yes | |
configure:16111: checking whether sse4.2 is supported | |
configure:16123: result: yes | |
configure:16126: checking whether avx is supported | |
configure:16138: result: no | |
configure:16145: checking whether C compiler accepts -mmmx | |
configure:16164: cc -c -g -O2 -mmmx conftest.c >&5 | |
configure:16164: $? = 0 | |
configure:16172: result: yes | |
configure:16186: checking whether C compiler accepts -msse | |
configure:16205: cc -c -g -O2 -msse conftest.c >&5 | |
configure:16205: $? = 0 | |
configure:16213: result: yes | |
configure:16227: checking whether C compiler accepts -msse2 | |
configure:16246: cc -c -g -O2 -msse2 conftest.c >&5 | |
configure:16246: $? = 0 | |
configure:16254: result: yes | |
configure:16268: checking whether C compiler accepts -msse3 | |
configure:16287: cc -c -g -O2 -msse3 conftest.c >&5 | |
configure:16287: $? = 0 | |
configure:16295: result: yes | |
configure:16309: checking whether C compiler accepts -mssse3 | |
configure:16328: cc -c -g -O2 -mssse3 conftest.c >&5 | |
configure:16328: $? = 0 | |
configure:16336: result: yes | |
configure:16350: checking whether C compiler accepts -msse4.1 | |
configure:16369: cc -c -g -O2 -msse4.1 conftest.c >&5 | |
configure:16369: $? = 0 | |
configure:16377: result: yes | |
configure:16391: checking whether C compiler accepts -msse4.2 | |
configure:16410: cc -c -g -O2 -msse4.2 conftest.c >&5 | |
configure:16410: $? = 0 | |
configure:16418: result: yes | |
configure:16473: checking cpuid.h usability | |
configure:16473: cc -c -g -O2 conftest.c >&5 | |
configure:16473: $? = 0 | |
configure:16473: result: yes | |
configure:16473: checking cpuid.h presence | |
configure:16473: cc -E conftest.c | |
configure:16473: $? = 0 | |
configure:16473: result: yes | |
configure:16473: checking for cpuid.h | |
configure:16473: result: yes | |
configure:16606: checking for javac | |
configure:16622: found /usr/bin/javac | |
configure:16633: result: javac | |
configure:16703: checking for javac | |
configure:16721: found /usr/bin/javac | |
configure:16734: result: /usr/bin/javac | |
configure:16792: checking symlink for /usr/bin/javac | |
configure:16800: result: /System/Library/Frameworks/JavaVM.framework/Versions/Current/Commands/javac | |
configure:16994: checking for doxygen | |
configure:17027: result: no | |
configure:17047: WARNING: doxygen not found - will not generate any doxygen documentation | |
configure:17100: checking for perl | |
configure:17118: found /usr/bin/perl | |
configure:17130: result: /usr/bin/perl | |
configure:18953: checking that generated files are newer than configure | |
configure:18959: result: done | |
configure:19114: creating ./config.status | |
## ---------------------- ## | |
## Running config.status. ## | |
## ---------------------- ## | |
This file was extended by libhmsbeagle config.status 1.0.0, which was | |
generated by GNU Autoconf 2.69. Invocation command line was | |
CONFIG_FILES = | |
CONFIG_HEADERS = | |
CONFIG_LINKS = | |
CONFIG_COMMANDS = | |
$ ./config.status | |
on Peter-Fieldss-MacBook-Pro.local | |
config.status:1238: creating Makefile | |
config.status:1238: creating hmsbeagle-1.pc | |
config.status:1238: creating libhmsbeagle/Makefile | |
config.status:1238: creating libhmsbeagle/GPU/Makefile | |
config.status:1238: creating libhmsbeagle/GPU/kernels/Makefile | |
config.status:1238: creating libhmsbeagle/CPU/Makefile | |
config.status:1238: creating libhmsbeagle/plugin/Makefile | |
config.status:1238: creating examples/Makefile | |
config.status:1238: creating examples/tinytest/Makefile | |
config.status:1238: creating examples/complextest/Makefile | |
config.status:1238: creating examples/oddstatetest/Makefile | |
config.status:1238: creating examples/fourtaxon/Makefile | |
config.status:1238: creating examples/genomictest/Makefile | |
config.status:1238: creating examples/matrixtest/Makefile | |
config.status:1238: creating libhmsbeagle/config.h | |
config.status:1467: executing depfiles commands | |
config.status:1467: executing libtool commands | |
## ---------------- ## | |
## Cache variables. ## | |
## ---------------- ## | |
ac_cv_build=x86_64-apple-darwin12.2.0 | |
ac_cv_c_compiler_gnu=yes | |
ac_cv_cxx_compiler_gnu=yes | |
ac_cv_env_CCC_set= | |
ac_cv_env_CCC_value= | |
ac_cv_env_CC_set=set | |
ac_cv_env_CC_value=cc | |
ac_cv_env_CFLAGS_set= | |
ac_cv_env_CFLAGS_value= | |
ac_cv_env_CPPFLAGS_set= | |
ac_cv_env_CPPFLAGS_value= | |
ac_cv_env_CPP_set= | |
ac_cv_env_CPP_value= | |
ac_cv_env_CXXCPP_set= | |
ac_cv_env_CXXCPP_value= | |
ac_cv_env_CXXFLAGS_set= | |
ac_cv_env_CXXFLAGS_value= | |
ac_cv_env_CXX_set=set | |
ac_cv_env_CXX_value=c++ | |
ac_cv_env_DOXYGEN_PAPER_SIZE_set= | |
ac_cv_env_DOXYGEN_PAPER_SIZE_value= | |
ac_cv_env_LDFLAGS_set= | |
ac_cv_env_LDFLAGS_value= | |
ac_cv_env_LIBS_set= | |
ac_cv_env_LIBS_value= | |
ac_cv_env_build_alias_set= | |
ac_cv_env_build_alias_value= | |
ac_cv_env_host_alias_set= | |
ac_cv_env_host_alias_value= | |
ac_cv_env_target_alias_set= | |
ac_cv_env_target_alias_value= | |
ac_cv_file__usr_local_cuda_=yes | |
ac_cv_file__usr_local_cuda_include=yes | |
ac_cv_file__usr_local_cuda_lib=yes | |
ac_cv_header_cpuid_h=yes | |
ac_cv_header_dlfcn_h=yes | |
ac_cv_header_inttypes_h=yes | |
ac_cv_header_memory_h=yes | |
ac_cv_header_stdc=yes | |
ac_cv_header_stdint_h=yes | |
ac_cv_header_stdlib_h=yes | |
ac_cv_header_string_h=yes | |
ac_cv_header_strings_h=yes | |
ac_cv_header_sys_stat_h=yes | |
ac_cv_header_sys_types_h=yes | |
ac_cv_header_unistd_h=yes | |
ac_cv_host=x86_64-apple-darwin12.2.0 | |
ac_cv_objext=o | |
ac_cv_path_EGREP='/usr/bin/grep -E' | |
ac_cv_path_FGREP='/usr/bin/grep -F' | |
ac_cv_path_GREP=/usr/bin/grep | |
ac_cv_path_NVCC=/Developer/NVIDIA/CUDA-5.0/bin/nvcc | |
ac_cv_path_SED=/usr/local/Library/ENV/4.3/sed | |
ac_cv_path__ACJNI_JAVAC=/usr/bin/javac | |
ac_cv_path_ac_pt_DX_PERL=/usr/bin/perl | |
ac_cv_path_install='/usr/bin/install -c' | |
ac_cv_prog_AWK=awk | |
ac_cv_prog_CPP='cc -E' | |
ac_cv_prog_CXXCPP='c++ -E' | |
ac_cv_prog_JAVAC=javac | |
ac_cv_prog_ac_ct_AR=ar | |
ac_cv_prog_ac_ct_CC=cc | |
ac_cv_prog_ac_ct_DSYMUTIL=dsymutil | |
ac_cv_prog_ac_ct_LIPO=lipo | |
ac_cv_prog_ac_ct_NMEDIT=nmedit | |
ac_cv_prog_ac_ct_OTOOL=otool | |
ac_cv_prog_ac_ct_RANLIB=ranlib | |
ac_cv_prog_ac_ct_STRIP=strip | |
ac_cv_prog_cc_c89= | |
ac_cv_prog_cc_g=yes | |
ac_cv_prog_cxx_g=yes | |
ac_cv_prog_make_make_set=yes | |
ac_cv_search_lt_dlinit=-lltdl | |
am_cv_CC_dependencies_compiler_type=gcc3 | |
am_cv_CXX_dependencies_compiler_type=gcc3 | |
am_cv_make_support_nested_variables=yes | |
ax_cv_check_cflags___mmmx=yes | |
ax_cv_check_cflags___msse2=yes | |
ax_cv_check_cflags___msse3=yes | |
ax_cv_check_cflags___msse4_1=yes | |
ax_cv_check_cflags___msse4_2=yes | |
ax_cv_check_cflags___msse=yes | |
ax_cv_check_cflags___mssse3=yes | |
ax_cv_gcc_version=4.2.1 | |
ax_cv_gcc_x86_cpuid_0x00000001=20655:100800:29ae3ff:bfebfbff | |
ax_cv_gcc_x86_cpuid_=unknown | |
ax_cv_have_avx_ext=no | |
ax_cv_have_mmx_ext=yes | |
ax_cv_have_sse2_ext=yes | |
ax_cv_have_sse3_ext=yes | |
ax_cv_have_sse41_ext=yes | |
ax_cv_have_sse42_ext=yes | |
ax_cv_have_sse_ext=yes | |
ax_cv_have_ssse3_ext=yes | |
lt_cv_apple_cc_single_mod=yes | |
lt_cv_ar_at_file=no | |
lt_cv_deplibs_check_method=pass_all | |
lt_cv_file_magic_cmd='$MAGIC_CMD' | |
lt_cv_file_magic_test_file= | |
lt_cv_ld_exported_symbols_list=yes | |
lt_cv_ld_force_load=yes | |
lt_cv_ld_reload_flag=-r | |
lt_cv_nm_interface='BSD nm' | |
lt_cv_objdir=.libs | |
lt_cv_path_LD=/usr/bin/ld | |
lt_cv_path_LDCXX=/usr/bin/ld | |
lt_cv_path_NM=/usr/bin/nm | |
lt_cv_path_mainfest_tool=no | |
lt_cv_prog_compiler_c_o=yes | |
lt_cv_prog_compiler_c_o_CXX=yes | |
lt_cv_prog_compiler_pic='-fno-common -DPIC' | |
lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC' | |
lt_cv_prog_compiler_pic_works=yes | |
lt_cv_prog_compiler_pic_works_CXX=yes | |
lt_cv_prog_compiler_rtti_exceptions=yes | |
lt_cv_prog_compiler_static_works=no | |
lt_cv_prog_compiler_static_works_CXX=no | |
lt_cv_prog_gnu_ld=no | |
lt_cv_prog_gnu_ldcxx=no | |
lt_cv_sharedlib_from_linklib_cmd='printf %s\n' | |
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' | |
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' | |
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' | |
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' | |
lt_cv_sys_max_cmd_len=196608 | |
lt_cv_to_host_file_cmd=func_convert_file_noop | |
lt_cv_to_tool_file_cmd=func_convert_file_noop | |
## ----------------- ## | |
## Output variables. ## | |
## ----------------- ## | |
ACLOCAL='${SHELL} /private/tmp/beagle-UFvZ/.config/missing aclocal-1.13' | |
AMDEPBACKSLASH='\' | |
AMDEP_FALSE='#' | |
AMDEP_TRUE='' | |
AMTAR='$${TAR-tar}' | |
AM_BACKSLASH='\' | |
AM_CXXFLAGS=' -DDLS_MACOS -m64' | |
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' | |
AM_DEFAULT_VERBOSITY='1' | |
AM_V='$(V)' | |
AR='ar' | |
AUTOCONF='${SHELL} /private/tmp/beagle-UFvZ/.config/missing autoconf' | |
AUTOHEADER='${SHELL} /private/tmp/beagle-UFvZ/.config/missing autoheader' | |
AUTOMAKE='${SHELL} /private/tmp/beagle-UFvZ/.config/missing automake-1.13' | |
AWK='awk' | |
BUILDCUDA_FALSE='#' | |
BUILDCUDA_TRUE='' | |
BUILDJNI_FALSE='#' | |
BUILDJNI_TRUE='' | |
BUILDOPENCL_FALSE='' | |
BUILDOPENCL_TRUE='#' | |
CC='cc' | |
CCDEPMODE='depmode=gcc3' | |
CFLAGS='-g -O2' | |
CHECK_LIB_PATH='$(top_builddir)/libhmsbeagle/CPU/.libs:$(top_builddir)/libhmsbeagle/GPU/.libs' | |
CPP='cc -E' | |
CPPFLAGS=' -I/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers' | |
CUDA_CFLAGS=' -DCUDA -I/usr/local/cuda/include' | |
CUDA_LIBS=' -lcuda -L/usr/local/cuda/lib' | |
CXX='c++' | |
CXXCPP='c++ -E' | |
CXXDEPMODE='depmode=gcc3' | |
CXXFLAGS=' -O3' | |
CYGPATH_W='echo' | |
DEFS='-DHAVE_CONFIG_H' | |
DEPDIR='.deps' | |
DLLTOOL='false' | |
DOXYGEN_PAPER_SIZE='' | |
DSYMUTIL='dsymutil' | |
DUMPBIN='' | |
DX_COND_chi_FALSE='' | |
DX_COND_chi_TRUE='#' | |
DX_COND_chm_FALSE='' | |
DX_COND_chm_TRUE='#' | |
DX_COND_doc_FALSE='' | |
DX_COND_doc_TRUE='#' | |
DX_COND_dot_FALSE='' | |
DX_COND_dot_TRUE='#' | |
DX_COND_html_FALSE='' | |
DX_COND_html_TRUE='#' | |
DX_COND_latex_FALSE='' | |
DX_COND_latex_TRUE='#' | |
DX_COND_man_FALSE='' | |
DX_COND_man_TRUE='#' | |
DX_COND_pdf_FALSE='' | |
DX_COND_pdf_TRUE='#' | |
DX_COND_ps_FALSE='' | |
DX_COND_ps_TRUE='#' | |
DX_COND_rtf_FALSE='' | |
DX_COND_rtf_TRUE='#' | |
DX_COND_xml_FALSE='' | |
DX_COND_xml_TRUE='#' | |
DX_CONFIG='beagle.dox' | |
DX_DOCDIR='doc' | |
DX_DOT='' | |
DX_DOXYGEN='' | |
DX_DVIPS='' | |
DX_EGREP='' | |
DX_ENV=' SRCDIR='\''.'\'' PROJECT='\''libhmsbeagle'\'' DOCDIR='\''doc'\'' VERSION='\''1.0.0'\'' HAVE_DOT='\''NO'\'' GENERATE_MAN='\''NO'\'' GENERATE_RTF='\''NO'\'' GENERATE_XML='\''NO'\'' GENERATE_HTMLHELP='\''NO'\'' GENERATE_CHI='\''NO'\'' GENERATE_HTML='\''NO'\'' GENERATE_LATEX='\''NO'\''' | |
DX_FLAG_chi='0' | |
DX_FLAG_chm='0' | |
DX_FLAG_doc='0' | |
DX_FLAG_dot='0' | |
DX_FLAG_html='0' | |
DX_FLAG_man='0' | |
DX_FLAG_pdf='0' | |
DX_FLAG_ps='0' | |
DX_FLAG_rtf='0' | |
DX_FLAG_xml='0' | |
DX_HHC='' | |
DX_LATEX='' | |
DX_MAKEINDEX='' | |
DX_PDFLATEX='' | |
DX_PERL='/usr/bin/perl' | |
DX_PROJECT='libhmsbeagle' | |
ECHO_C='\c' | |
ECHO_N='' | |
ECHO_T='' | |
EGREP='/usr/bin/grep -E' | |
EXEEXT='' | |
FGREP='/usr/bin/grep -F' | |
GCC_VERSION='4.2.1' | |
GENERIC_API_VERSION='1' | |
GENERIC_LIBRARY_NAME='libhmsbeagle' | |
GENERIC_LIBRARY_VERSION='1:1:0' | |
GENERIC_VERSION='1.1.0' | |
GREP='/usr/bin/grep' | |
HAVE_OPENMP_FALSE='' | |
HAVE_OPENMP_TRUE='#' | |
HAVE_SSE2_FALSE='#' | |
HAVE_SSE2_TRUE='' | |
INSTALL_DATA='${INSTALL} -m 644' | |
INSTALL_PROGRAM='${INSTALL}' | |
INSTALL_SCRIPT='${INSTALL}' | |
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' | |
JAVAC='javac' | |
JNI_EXTRA_LDFLAGS='-shrext .jnilib' | |
LD='/usr/bin/ld' | |
LDFLAGS='' | |
LIBOBJS='' | |
LIBS='-lltdl ' | |
LIBTOOL='$(SHELL) $(top_builddir)/libtool' | |
LIPO='lipo' | |
LN_S='ln -s' | |
LTLIBOBJS='' | |
MAKEINFO='${SHELL} /private/tmp/beagle-UFvZ/.config/missing makeinfo' | |
MANIFEST_TOOL=':' | |
MKDIR_P='.config/install-sh -c -d' | |
NM='/usr/bin/nm' | |
NMEDIT='nmedit' | |
NVCC='/Developer/NVIDIA/CUDA-5.0/bin/nvcc' | |
NVCCFLAGS='-O3 -m64 -D_POSIX_C_SOURCE' | |
OBJDUMP='false' | |
OBJEXT='o' | |
OPENCL_CFLAGS='' | |
OPENCL_LIBS='' | |
OPENMP_CFLAGS='' | |
OPENMP_CXXFLAGS='' | |
OTOOL64=':' | |
OTOOL='otool' | |
PACKAGE='libhmsbeagle' | |
PACKAGE_BUGREPORT='beagle-dev@googlegroups.com' | |
PACKAGE_NAME='libhmsbeagle' | |
PACKAGE_STRING='libhmsbeagle 1.0.0' | |
PACKAGE_TARNAME='libhmsbeagle' | |
PACKAGE_URL='' | |
PACKAGE_VERSION='1.0.0' | |
PATH_SEPARATOR=':' | |
RANLIB='ranlib' | |
SED='/usr/local/Library/ENV/4.3/sed' | |
SET_MAKE='' | |
SHELL='/bin/sh' | |
SIMD_FLAGS=' -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2' | |
STRIP='strip' | |
VERSION='1.1.0' | |
_ACJNI_JAVAC='/usr/bin/javac' | |
abs_top_builddir='' | |
abs_top_srcdir='' | |
ac_ct_AR='ar' | |
ac_ct_CC='cc' | |
ac_ct_CXX='' | |
ac_ct_DUMPBIN='' | |
am__EXEEXT_FALSE='' | |
am__EXEEXT_TRUE='#' | |
am__fastdepCC_FALSE='#' | |
am__fastdepCC_TRUE='' | |
am__fastdepCXX_FALSE='#' | |
am__fastdepCXX_TRUE='' | |
am__include='include' | |
am__isrc='' | |
am__leading_dot='.' | |
am__nodep='_no' | |
am__quote='' | |
am__tar='$${TAR-tar} chof - "$$tardir"' | |
am__untar='$${TAR-tar} xf -' | |
bindir='${exec_prefix}/bin' | |
build='x86_64-apple-darwin12.2.0' | |
build_alias='' | |
build_cpu='x86_64' | |
build_os='darwin12.2.0' | |
build_vendor='apple' | |
datadir='${datarootdir}' | |
datarootdir='${prefix}/share' | |
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' | |
dvidir='${docdir}' | |
exec_prefix='${prefix}' | |
host='x86_64-apple-darwin12.2.0' | |
host_alias='' | |
host_cpu='x86_64' | |
host_os='darwin12.2.0' | |
host_vendor='apple' | |
htmldir='${docdir}' | |
includedir='${prefix}/include' | |
infodir='${datarootdir}/info' | |
install_sh='${SHELL} /private/tmp/beagle-UFvZ/.config/install-sh' | |
libdir='${exec_prefix}/lib' | |
libexecdir='${exec_prefix}/libexec' | |
localedir='${datarootdir}/locale' | |
localstatedir='${prefix}/var' | |
mandir='${datarootdir}/man' | |
mkdir_p='$(MKDIR_P)' | |
oldincludedir='/usr/include' | |
pdfdir='${docdir}' | |
prefix='/usr/local/Cellar/beagle/HEAD--with-cuda=/Developer/NVIDIA/CUDA-5.0/bin' | |
program_transform_name='s,x,x,' | |
psdir='${docdir}' | |
sbindir='${exec_prefix}/sbin' | |
sharedstatedir='${prefix}/com' | |
sysconfdir='${prefix}/etc' | |
target_alias='' | |
## ----------- ## | |
## confdefs.h. ## | |
## ----------- ## | |
/* confdefs.h */ | |
#define PACKAGE_NAME "libhmsbeagle" | |
#define PACKAGE_TARNAME "libhmsbeagle" | |
#define PACKAGE_VERSION "1.0.0" | |
#define PACKAGE_STRING "libhmsbeagle 1.0.0" | |
#define PACKAGE_BUGREPORT "beagle-dev@googlegroups.com" | |
#define PACKAGE_URL "" | |
#define STDC_HEADERS 1 | |
#define HAVE_SYS_TYPES_H 1 | |
#define HAVE_SYS_STAT_H 1 | |
#define HAVE_STDLIB_H 1 | |
#define HAVE_STRING_H 1 | |
#define HAVE_MEMORY_H 1 | |
#define HAVE_STRINGS_H 1 | |
#define HAVE_INTTYPES_H 1 | |
#define HAVE_STDINT_H 1 | |
#define HAVE_UNISTD_H 1 | |
#define HAVE_DLFCN_H 1 | |
#define LT_OBJDIR ".libs/" | |
#define HAVE_LIBLTDL "1" | |
#define HAVE_MMX /**/ | |
#define HAVE_SSE /**/ | |
#define HAVE_SSE2 /**/ | |
#define HAVE_SSE3 /**/ | |
#define HAVE_SSSE3 /**/ | |
#define HAVE_SSE41 /**/ | |
#define HAVE_SSE42 1 | |
#define HAVE_CPUID_H 1 | |
configure: exit 0 | |
################################# | |
######### brew config ############# | |
brew --config | |
HOMEBREW_VERSION: 0.9.3 | |
HEAD: 9bf47d705a41777275910a5948077073be9dad4d | |
HOMEBREW_PREFIX: /usr/local | |
HOMEBREW_CELLAR: /usr/local/Cellar | |
CPU: quad-core 64-bit arrandale | |
OS X: 10.8.2-x86_64 | |
Xcode: 4.5.2 | |
CLT: 4.5.0.0.1.1249367152 | |
LLVM-GCC: build 2336 | |
Clang: 4.1 build 421 | |
X11: 2.7.4 => /opt/X11 | |
System Ruby: 1.8.7-358 | |
Perl: /Users/crd1859/perl5/perlbrew/perls/perl-5.16.0/bin/perl | |
Python: /usr/local/bin/python => /usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
Ruby: /Users/crd1859/.rvm/rubies/ruby-1.9.3-p194/bin/ruby | |
################################################## | |
######### brew doctor ############# | |
Warning: Unbrewed dylibs were found in /usr/local/lib. | |
If you didn't put them there on purpose they could cause problems when | |
building Homebrew formulae, and may need to be deleted. | |
Unexpected dylibs: | |
/usr/local/lib/libusb-0.1.4.4.4.dylib | |
/usr/local/lib/libusbpp-0.1.4.4.4.dylib | |
#################################### |
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